RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 LINC00158P58513 81 aa9.47□□□□□ -0.89
HMGA1-206ENST00000478214 NKAPP1Q8N9T2 125 aa9.47□□□□□ -0.89
HMGA1-206ENST00000478214 DIRC1Q969H9 104 aa9.47□□□□□ -0.89
HMGA1-206ENST00000478214 IGKCP01834 107 aa9.46□□□□□ -0.9
HMGA1-206ENST00000478214 TSPEAR-AS2P59090 65 aa9.46□□□□□ -0.9
HMGA1-206ENST00000478214 NDUFA12Q9UI09 145 aa9.46□□□□□ -0.9
HMGA1-206ENST00000478214 H0Y9J4 135 aa9.45□□□□□ -0.9
HMGA1-206ENST00000478214 SMIM13P0DJ93 91 aa9.45□□□□□ -0.9
HMGA1-206ENST00000478214 VPREB1P12018 145 aa9.45□□□□□ -0.9
HMGA1-206ENST00000478214 Q8NDZ9 215 aa9.45□□□□□ -0.9
HMGA1-206ENST00000478214 LEPROTO15243 131 aa9.44□□□□□ -0.9
HMGA1-206ENST00000478214 KRTAP10-8P60410 259 aa9.44□□□□□ -0.9
HMGA1-206ENST00000478214 HERV-K104P63124 156 aa9.44□□□□□ -0.9
HMGA1-206ENST00000478214 MEIG1Q5JSS6 88 aa9.44□□□□□ -0.9
HMGA1-206ENST00000478214 HMCN2Q8NDA2 5059 aa9.44□□□□□ -0.9
HMGA1-206ENST00000478214 MYMXA0A1B0GTQ4 84 aa9.43□□□□□ -0.9
HMGA1-206ENST00000478214 SYS1-DBNDD2H3BUS1 97 aa9.43□□□□□ -0.9
HMGA1-206ENST00000478214 PLEKHB2Q96CS7 222 aa9.43□□□□□ -0.9
HMGA1-206ENST00000478214 ZNF861PO60384 105 aa9.42□□□□□ -0.9
HMGA1-206ENST00000478214 BCE1O60756 84 aa9.42□□□□□ -0.9
HMGA1-206ENST00000478214 HERVK_113P61574 105 aa9.42□□□□□ -0.9
HMGA1-206ENST00000478214 RPL24P83731 157 aaKnown RBP9.42□□□□□ -0.9
HMGA1-206ENST00000478214 COA6Q5JTJ3 125 aaKnown RBP9.42□□□□□ -0.9
HMGA1-206ENST00000478214 IGKV2-28A0A075B6P5 120 aa9.41□□□□□ -0.9
HMGA1-206ENST00000478214 J3QQQ9 107 aa9.41□□□□□ -0.9
HMGA1-206ENST00000478214 ATP6V1G1O75348 118 aa9.41□□□□□ -0.9
HMGA1-206ENST00000478214 IGKV2D-28P01615 120 aa9.41□□□□□ -0.9
HMGA1-206ENST00000478214 MIR7-3HGQ8N6C7 128 aa9.41□□□□□ -0.9
HMGA1-206ENST00000478214 IGLV1-50A0A075B6I6 118 aa9.39□□□□□ -0.91
HMGA1-206ENST00000478214 S100A1P23297 94 aa9.39□□□□□ -0.91
HMGA1-206ENST00000478214 LINC00587B1AMM8 73 aa9.38□□□□□ -0.91
HMGA1-206ENST00000478214 KRTAP1-4P0C5Y4 121 aa9.38□□□□□ -0.91
HMGA1-206ENST00000478214 LGALS3P17931 250 aaKnown RBP9.38□□□□□ -0.91
HMGA1-206ENST00000478214 LINC01545Q5VT33 79 aa9.38□□□□□ -0.91
HMGA1-206ENST00000478214 PET117Q6UWS5 81 aa9.38□□□□□ -0.91
HMGA1-206ENST00000478214 PRR26Q8N8Z3 221 aa9.38□□□□□ -0.91
HMGA1-206ENST00000478214 C3orf79P0CE67 100 aa9.37□□□□□ -0.91
HMGA1-206ENST00000478214 RPL28P46779 137 aaKnown RBP9.37□□□□□ -0.91
HMGA1-206ENST00000478214 NMUP48645 174 aa9.37□□□□□ -0.91
HMGA1-206ENST00000478214 BOD1L2Q8IYS8 172 aa9.37□□□□□ -0.91
HMGA1-206ENST00000478214 TMEM238C9JI98 176 aa9.36□□□□□ -0.91
HMGA1-206ENST00000478214 E9PLD3 99 aa9.36□□□□□ -0.91
HMGA1-206ENST00000478214 DAND5Q8N907 189 aa9.36□□□□□ -0.91
HMGA1-206ENST00000478214 M0R378 163 aa9.35□□□□□ -0.91
HMGA1-206ENST00000478214 UBE2AP49459 152 aa9.35□□□□□ -0.91
HMGA1-206ENST00000478214 KRTDAPP60985 99 aa9.35□□□□□ -0.91
HMGA1-206ENST00000478214 KRTAP13-1Q8IUC0 172 aa9.35□□□□□ -0.91
HMGA1-206ENST00000478214 TMEM126AQ9H061 195 aa9.34□□□□□ -0.91
HMGA1-206ENST00000478214 NCR3O14931 201 aa9.32□□□□□ -0.92
HMGA1-206ENST00000478214 PRLHP81277 87 aa9.32□□□□□ -0.92
HMGA1-206ENST00000478214 A0A0J9YXY3 114 aa9.31□□□□□ -0.92
HMGA1-206ENST00000478214 FAM19A1Q7Z5A9 133 aa9.31□□□□□ -0.92
HMGA1-206ENST00000478214 LOC107984156A0A0G2JMH3 177 aa9.3□□□□□ -0.92
HMGA1-206ENST00000478214 ARL17AQ8IVW1 177 aa9.3□□□□□ -0.92
HMGA1-206ENST00000478214 IGKV2D-26A0A0A0MRZ7 120 aa9.29□□□□□ -0.92
HMGA1-206ENST00000478214 ADAMTSL4-AS1Q5T5F5 129 aa9.29□□□□□ -0.92
HMGA1-206ENST00000478214 TTTY13Q9BZ97 58 aa9.28□□□□□ -0.92
HMGA1-206ENST00000478214 TRBV10-3A0A0K0K1G6 114 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 C20orf202A1L168 122 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 NPC2P61916 151 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 SOSTDC1Q6X4U4 206 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 MIEN1Q9BRT3 115 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 ANAPC11Q9NYG5 84 aa9.27□□□□□ -0.93
HMGA1-206ENST00000478214 PRYO14603 147 aa9.26□□□□□ -0.93
HMGA1-206ENST00000478214 EIF4EBP3O60516 100 aaPredicted RBP9.26□□□□□ -0.93
HMGA1-206ENST00000478214 RPL13AP40429 203 aaKnown RBP9.26□□□□□ -0.93
HMGA1-206ENST00000478214 ATOH7Q8N100 152 aa9.26□□□□□ -0.93
HMGA1-206ENST00000478214 HIST3H2BBQ8N257 126 aa9.26□□□□□ -0.93
HMGA1-206ENST00000478214 A0A087X002 238 aa9.25□□□□□ -0.93
HMGA1-206ENST00000478214 ZNF815PA8K554 130 aa9.25□□□□□ -0.93
HMGA1-206ENST00000478214 LITAFQ99732 161 aa9.25□□□□□ -0.93
HMGA1-206ENST00000478214 KCNQ1DNQ9H478 68 aa9.25□□□□□ -0.93
HMGA1-206ENST00000478214 TRBV10-2A0A0K0K1G8 114 aa9.24□□□□□ -0.93
HMGA1-206ENST00000478214 ANKRD39Q53RE8 183 aa9.24□□□□□ -0.93
HMGA1-206ENST00000478214 SPANXB1Q9NS25 103 aaPredicted RBP9.24□□□□□ -0.93
HMGA1-206ENST00000478214 NDUFC2O95298 119 aa9.23□□□□□ -0.93
HMGA1-206ENST00000478214 SPRR1AP35321 89 aa9.23□□□□□ -0.93
HMGA1-206ENST00000478214 HIST1H2BLQ99880 126 aa9.23□□□□□ -0.93
HMGA1-206ENST00000478214 HIGD2AQ9BW72 106 aa9.23□□□□□ -0.93
HMGA1-206ENST00000478214 TIMM17BO60830 172 aa9.22□□□□□ -0.93
HMGA1-206ENST00000478214 CRYGAP11844 174 aa9.22□□□□□ -0.93
HMGA1-206ENST00000478214 S100A2P29034 98 aa9.22□□□□□ -0.93
HMGA1-206ENST00000478214 DDTP30046 118 aa9.22□□□□□ -0.93
HMGA1-206ENST00000478214 LINC00337Q8N6G1 96 aa9.22□□□□□ -0.93
HMGA1-206ENST00000478214 KRTAP4-16G5E9R7 235 aaPredicted RBP9.21□□□□□ -0.94
HMGA1-206ENST00000478214 S100A6P06703 90 aa9.21□□□□□ -0.94
HMGA1-206ENST00000478214 LINC00308Q8TCZ7 52 aa9.21□□□□□ -0.94
HMGA1-206ENST00000478214 ETDCA0A1B0GVM5 59 aa9.2□□□□□ -0.94
HMGA1-206ENST00000478214 UBR4Q5T4S7 5183 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 IGLV6-57P01721 117 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 AKR1D1P51857 326 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 S100A12P80511 92 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 KRTAP13-2Q52LG2 175 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 S100A7L2Q5SY68 101 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 TYMSOSQ8TAI1 123 aa9.19□□□□□ -0.94
HMGA1-206ENST00000478214 FAM229BQ4G0N7 80 aa9.18□□□□□ -0.94
HMGA1-206ENST00000478214 SNRPEP62304 92 aaKnown RBP9.17□□□□□ -0.94
HMGA1-206ENST00000478214 SCGB1D4Q6XE38 83 aa9.17□□□□□ -0.94
HMGA1-206ENST00000478214 PCP2Q8IVA1 136 aa9.17□□□□□ -0.94
HMGA1-206ENST00000478214 SPANXCQ9NY87 97 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms