RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 RHPN1-AS1Q9BWJ2 59 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 U3KQA8 63 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 HIVEP2P31629 2446 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 TNRC6BQ9UPQ9 1833 aaKnown RBP2.14□□□□□ -2.07
VPS54-204ENST00000416400 TRAV22A0A0B4J277 110 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 LINC00575Q6W349 94 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 DEFB132Q7Z7B7 95 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 CDC42SE2Q9NRR3 84 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 PSORS1C2Q9UIG4 136 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 MED12Q93074 2177 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 EML6Q6ZMW3 1958 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 EXPH5Q8NEV8 1989 aa2.14□□□□□ -2.07
VPS54-204ENST00000416400 HMCN1Q96RW7 5635 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 PTPRBP23467 1997 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.13□□□□□ -2.07
VPS54-204ENST00000416400 CHKB-CPT1BH3BT56 60 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 COX7BP24311 80 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 COX6A2Q02221 97 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 C7orf65Q6ZTY9 151 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 WFDC9Q8NEX5 89 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 DIRC1Q969H9 104 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 ARFGEF3Q5TH69 2177 aa2.13□□□□□ -2.07
VPS54-204ENST00000416400 INTS1Q8N201 2190 aaKnown RBP2.13□□□□□ -2.07
VPS54-204ENST00000416400 KNTC1P50748 2209 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 LCE6AA0A183 80 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 ETDCA0A1B0GVM5 59 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 HCG22E2RYF7 251 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 PRB4P10163 310 aaPredicted RBP2.12□□□□□ -2.07
VPS54-204ENST00000416400 TOMM7Q9P0U1 55 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 CEP192Q8TEP8 1941 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 PCNX2A6NKB5 2137 aa2.12□□□□□ -2.07
VPS54-204ENST00000416400 F5P12259 2224 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 TNCP24821 2201 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 TRGV2A0A075B6R0 118 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 LOC101927531A0A1B0GV80 90 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 PRM2P04554 102 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 C9orf116Q5BN46 136 aaPredicted RBP2.11□□□□□ -2.07
VPS54-204ENST00000416400 Q6ZTI0 123 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 Q8IZM0 81 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 Q9BRP9 147 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 CDC42SE1Q9NRR8 79 aa2.11□□□□□ -2.07
VPS54-204ENST00000416400 MYO7AQ13402 2215 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 LTBP2Q14767 1821 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 PDE4DIPQ5VU43 2346 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 CNTRLQ7Z7A1 2325 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 C19orf84I3L1E1 186 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 C5orf56Q8N8D9 126 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 SPTSSBQ8NFR3 76 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 DEFB104AQ8WTQ1 72 aa2.1□□□□□ -2.07
VPS54-204ENST00000416400 DSCAMO60469 2012 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 A8MTW9 85 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 A8MUN3 132 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 G3V318 75 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 SPINK13Q1W4C9 94 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 Q5VV11 94 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 CASC2Q6XLA1 102 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 ZCCHC13Q8WW36 166 aaKnown RBP2.09□□□□□ -2.07
VPS54-204ENST00000416400 LINC00208Q96KT6 92 aa2.09□□□□□ -2.07
VPS54-204ENST00000416400 DIDO1Q9BTC0 2240 aaKnown RBP2.09□□□□□ -2.08
VPS54-204ENST00000416400 PI4KAP42356 2102 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 FREM1Q5H8C1 2179 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 IGKV3-7A0A075B6H7 116 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 TRGV4A0A0C4DH28 118 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 A6NN06 94 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 FDCSPQ8NFU4 85 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 PRR15LQ9BU68 103 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 WFDC10AQ9H1F0 79 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 FAM215AQ9Y5M1 114 aa2.08□□□□□ -2.08
VPS54-204ENST00000416400 ASCC3Q8N3C0 2202 aaKnown RBP2.07□□□□□ -2.08
VPS54-204ENST00000416400 LINC00959A0A1B0GUT2 108 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 HTN1P15515 57 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 LINC01554Q52M75 96 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 Q6ZQY7 126 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 KCNQ1DNQ9H478 68 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 LINC01558Q9Y6Z2 57 aa2.07□□□□□ -2.08
VPS54-204ENST00000416400 A0A096LNT2 108 aa2.06□□□□□ -2.08
VPS54-204ENST00000416400 GVQW2A0A096LPI5 108 aaPredicted RBP2.06□□□□□ -2.08
VPS54-204ENST00000416400 TRGV1A0A0A0MS02 117 aa2.06□□□□□ -2.08
VPS54-204ENST00000416400 KRTAP13-1Q8IUC0 172 aa2.06□□□□□ -2.08
VPS54-204ENST00000416400 ABCA1O95477 2261 aa2.06□□□□□ -2.08
VPS54-204ENST00000416400 KNL1Q8NG31 2342 aa2.06□□□□□ -2.08
VPS54-204ENST00000416400 IGLV5-48A0A075B6I7 105 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 DEFB131AP59861 70 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 SPAG11BQ08648 103 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 KRTAP6-3Q3LI67 103 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 RETNLBQ9BQ08 111 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 ZGRF1Q86YA3 2104 aa2.05□□□□□ -2.08
VPS54-204ENST00000416400 LYNX1G3V0Z9 82 aa2.04□□□□□ -2.08
VPS54-204ENST00000416400 LYNX1P0DP58 116 aa2.04□□□□□ -2.08
VPS54-204ENST00000416400 DEFB1P60022 68 aa2.04□□□□□ -2.08
VPS54-204ENST00000416400 CNBPP62633 177 aaKnown RBP2.04□□□□□ -2.08
VPS54-204ENST00000416400 PRB3Q04118 309 aaPredicted RBP2.04□□□□□ -2.08
VPS54-204ENST00000416400 DEFB109BQ30KR1 87 aa2.04□□□□□ -2.08
VPS54-204ENST00000416400 TP53AIP1Q9HCN2 124 aa2.04□□□□□ -2.08
VPS54-204ENST00000416400 IGKV3OR2-268A0A0C4DH90 116 aa2.03□□□□□ -2.08
VPS54-204ENST00000416400 H3BUX3 64 aa2.03□□□□□ -2.08
VPS54-204ENST00000416400 SPRR4Q96PI1 79 aa2.03□□□□□ -2.08
VPS54-204ENST00000416400 NAV3Q8IVL0 2385 aa2.03□□□□□ -2.08
VPS54-204ENST00000416400 DOCK10Q96BY6 2186 aa2.03□□□□□ -2.08
VPS54-204ENST00000416400 WNK2Q9Y3S1 2297 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms