RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 LOC107984156A0A0G2JMH3 177 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 BCE1O60756 84 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 DPM2O94777 84 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 MT1HL1P0DM35 61 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 PFN2P35080 140 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 LINC00158P58513 81 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 KRTAP7-1Q8IUC3 87 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 ARL17AQ8IVW1 177 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 FAM19A2Q8N3H0 131 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 LINC00167Q96N53 147 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 SND1-IT1Q9HBX3 110 aa3.9□□□□□ -1.79
USP54-202ENST00000413442 M0R378 163 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 LEPROTO15243 131 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 IGKCP01834 107 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 S100A1P23297 94 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 MEIG1Q5JSS6 88 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 COA6Q5JTJ3 125 aaKnown RBP3.89□□□□□ -1.79
USP54-202ENST00000413442 PKHD1L1Q86WI1 4243 aa3.89□□□□□ -1.79
USP54-202ENST00000413442 VPREB1P12018 145 aa3.88□□□□□ -1.79
USP54-202ENST00000413442 PET117Q6UWS5 81 aa3.88□□□□□ -1.79
USP54-202ENST00000413442 NDUFA12Q9UI09 145 aa3.88□□□□□ -1.79
USP54-202ENST00000413442 TRBV10-2A0A0K0K1G8 114 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 J3QQQ9 107 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BKO60814 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 NDUFC2O95298 119 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BJP06899 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 FABP4P15090 132 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BOP23527 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BBP33778 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BDP58876 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 SNRPEP62304 92 aaKnown RBP3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BCP62807 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST2H2BEQ16778 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 FAM229BQ4G0N7 80 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BHQ93079 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BNQ99877 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 HIST1H2BMQ99879 126 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 KRTAP4-8Q9BYQ9 185 aa3.87□□□□□ -1.79
USP54-202ENST00000413442 E9PLD3 99 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 SYS1-DBNDD2H3BUS1 97 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 LGALS3P17931 250 aaKnown RBP3.86□□□□□ -1.79
USP54-202ENST00000413442 UBE2AP49459 152 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 LINC00310P59036 64 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 KRTAP11-1Q8IUC1 163 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 COPS9Q8WXC6 57 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 MIEN1Q9BRT3 115 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 MYCBP2O75592 4640 aa3.86□□□□□ -1.79
USP54-202ENST00000413442 C20orf202A1L168 122 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 C5orf52A6NGY3 159 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 RPL37AP8A6NKH3 93 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 H0Y8G0 127 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 TIMM17BO60830 172 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 SMIM13P0DJ93 91 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 CRYGAP11844 174 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 LINC01545Q5VT33 79 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 MIR7-3HGQ8N6C7 128 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 LINC00337Q8N6G1 96 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 TMEM126AQ9H061 195 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 PPDPFQ9H3Y8 114 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 KCNQ1DNQ9H478 68 aa3.85□□□□□ -1.79
USP54-202ENST00000413442 PRYO14603 147 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 KRTAP1-4P0C5Y4 121 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 Q6ZVH6 145 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 KRTAP13-1Q8IUC0 172 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 BOD1L2Q8IYS8 172 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 LINC00518Q8N0U6 118 aa3.84□□□□□ -1.79
USP54-202ENST00000413442 ZNF706Q9Y5V0 76 aaPredicted RBP3.84□□□□□ -1.79
USP54-202ENST00000413442 A0A0J9YXY3 114 aa3.83□□□□□ -1.8
USP54-202ENST00000413442 SPRR1AP35321 89 aa3.83□□□□□ -1.8
USP54-202ENST00000413442 HINT1P49773 126 aaPredicted RBP3.83□□□□□ -1.8
USP54-202ENST00000413442 JOSD1Q15040 202 aaPredicted RBP3.83□□□□□ -1.8
USP54-202ENST00000413442 FAM19A1Q7Z5A9 133 aa3.83□□□□□ -1.8
USP54-202ENST00000413442 SPANXB1Q9NS25 103 aaPredicted RBP3.83□□□□□ -1.8
USP54-202ENST00000413442 HERC1Q15751 4861 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 IGKV2-28A0A075B6P5 120 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 GAGE10A6NGK3 116 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 IGKV2D-28P01615 120 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 SPAG11AQ6PDA7 123 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 PRR26Q8N8Z3 221 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 FAT3Q8TDW7 4589 aa3.82□□□□□ -1.8
USP54-202ENST00000413442 A0A0U1RRA0 63 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 ETDCA0A1B0GVM5 59 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 C3orf79P0CE67 100 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 IFITM1P13164 125 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 S100A7L2Q5SY68 101 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 TYMSOSQ8TAI1 123 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 KRTAP9-2Q9BYQ4 174 aa3.81□□□□□ -1.8
USP54-202ENST00000413442 LRP1Q07954 4544 aaKnown RBP3.8□□□□□ -1.8
USP54-202ENST00000413442 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.8□□□□□ -1.8
USP54-202ENST00000413442 SCO1O75880 301 aa3.8□□□□□ -1.8
USP54-202ENST00000413442 S100A6P06703 90 aa3.8□□□□□ -1.8
USP54-202ENST00000413442 DDTP30046 118 aa3.8□□□□□ -1.8
USP54-202ENST00000413442 SPANXCQ9NY87 97 aa3.8□□□□□ -1.8
USP54-202ENST00000413442 TMEM238C9JI98 176 aa3.79□□□□□ -1.8
USP54-202ENST00000413442 KRTAP4-16G5E9R7 235 aaPredicted RBP3.79□□□□□ -1.8
USP54-202ENST00000413442 IGLV6-57P01721 117 aa3.79□□□□□ -1.8
USP54-202ENST00000413442 S100A2P29034 98 aa3.79□□□□□ -1.8
USP54-202ENST00000413442 TSPEAR-AS2P59090 65 aa3.79□□□□□ -1.8
USP54-202ENST00000413442 KRTDAPP60985 99 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 195.5 ms