RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SRSF9Q13242 221 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLN3-207ENST00000395653 SPINK6Q6UWN8 80 aa13.36□□□□□ -0.27
CLN3-207ENST00000395653 MRPL55Q7Z7F7 128 aaKnown RBP13.36□□□□□ -0.27
CLN3-207ENST00000395653 J3QQQ9 107 aa13.35□□□□□ -0.27
CLN3-207ENST00000395653 LINC00158P58513 81 aa13.35□□□□□ -0.27
CLN3-207ENST00000395653 LINC00587B1AMM8 73 aa13.34□□□□□ -0.27
CLN3-207ENST00000395653 J3QL48 77 aa13.34□□□□□ -0.27
CLN3-207ENST00000395653 MEIG1Q5JSS6 88 aa13.34□□□□□ -0.27
CLN3-207ENST00000395653 NMUP48645 174 aa13.32□□□□□ -0.28
CLN3-207ENST00000395653 NKAPP1Q8N9T2 125 aa13.32□□□□□ -0.28
CLN3-207ENST00000395653 A0A0U1RRA0 63 aa13.31□□□□□ -0.28
CLN3-207ENST00000395653 E9PLD3 99 aa13.31□□□□□ -0.28
CLN3-207ENST00000395653 IGLV7-43P04211 117 aa13.31□□□□□ -0.28
CLN3-207ENST00000395653 SMIM13P0DJ93 91 aa13.31□□□□□ -0.28
CLN3-207ENST00000395653 LGALS3P17931 250 aaKnown RBP13.31□□□□□ -0.28
CLN3-207ENST00000395653 KRTDAPP60985 99 aa13.31□□□□□ -0.28
CLN3-207ENST00000395653 RPL24P83731 157 aaKnown RBP13.3□□□□□ -0.28
CLN3-207ENST00000395653 LINC00167Q96N53 147 aa13.3□□□□□ -0.28
CLN3-207ENST00000395653 VPREB1P12018 145 aa13.3□□□□□ -0.28
CLN3-207ENST00000395653 HERC1Q15751 4861 aa13.28□□□□□ -0.28
CLN3-207ENST00000395653 C20orf202A1L168 122 aa13.27□□□□□ -0.29
CLN3-207ENST00000395653 HIST3H2BBQ8N257 126 aa13.27□□□□□ -0.29
CLN3-207ENST00000395653 MIR7-3HGQ8N6C7 128 aa13.27□□□□□ -0.29
CLN3-207ENST00000395653 REG3GQ6UW15 175 aa13.26□□□□□ -0.29
CLN3-207ENST00000395653 GAGE10A6NGK3 116 aa13.25□□□□□ -0.29
CLN3-207ENST00000395653 Q8NDZ9 215 aa13.25□□□□□ -0.29
CLN3-207ENST00000395653 RPL37AP8A6NKH3 93 aa13.24□□□□□ -0.29
CLN3-207ENST00000395653 S100A6P06703 90 aa13.24□□□□□ -0.29
CLN3-207ENST00000395653 S100A2P29034 98 aa13.23□□□□□ -0.29
CLN3-207ENST00000395653 AKR1D1P51857 326 aa13.22□□□□□ -0.29
CLN3-207ENST00000395653 DIRC1Q969H9 104 aa13.22□□□□□ -0.29
CLN3-207ENST00000395653 HIST1H2BLQ99880 126 aa13.22□□□□□ -0.29
CLN3-207ENST00000395653 BOD1L2Q8IYS8 172 aa13.21□□□□□ -0.3
CLN3-207ENST00000395653 LINC01600Q96MT4 127 aa13.21□□□□□ -0.3
CLN3-207ENST00000395653 IGLV1-50A0A075B6I6 118 aa13.2□□□□□ -0.3
CLN3-207ENST00000395653 A0A0J9YXY3 114 aa13.2□□□□□ -0.3
CLN3-207ENST00000395653 BCE1O60756 84 aa13.2□□□□□ -0.3
CLN3-207ENST00000395653 IGKV2-28A0A075B6P5 120 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 LOC107984156A0A0G2JMH3 177 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 H0Y9J4 135 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 ZNF861PO60384 105 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 IGKV2D-28P01615 120 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 MT1HL1P0DM35 61 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 ARL17AQ8IVW1 177 aa13.19□□□□□ -0.3
CLN3-207ENST00000395653 IGKV2D-26A0A0A0MRZ7 120 aa13.18□□□□□ -0.3
CLN3-207ENST00000395653 DAND5Q8N907 189 aa13.18□□□□□ -0.3
CLN3-207ENST00000395653 M0R378 163 aa13.17□□□□□ -0.3
CLN3-207ENST00000395653 SNRPEP62304 92 aaKnown RBP13.15□□□□□ -0.3
CLN3-207ENST00000395653 ZNF815PA8K554 130 aa13.14□□□□□ -0.31
CLN3-207ENST00000395653 RPL28P46779 137 aaKnown RBP13.14□□□□□ -0.31
CLN3-207ENST00000395653 ATOH7Q8N100 152 aa13.14□□□□□ -0.31
CLN3-207ENST00000395653 MIEN1Q9BRT3 115 aa13.13□□□□□ -0.31
CLN3-207ENST00000395653 ANKRD39Q53RE8 183 aa13.13□□□□□ -0.31
CLN3-207ENST00000395653 ADAMTSL4-AS1Q5T5F5 129 aa13.13□□□□□ -0.31
CLN3-207ENST00000395653 TMEM126AQ9H061 195 aa13.13□□□□□ -0.31
CLN3-207ENST00000395653 C5orf52A6NGY3 159 aa13.12□□□□□ -0.31
CLN3-207ENST00000395653 TIMM17BO60830 172 aa13.12□□□□□ -0.31
CLN3-207ENST00000395653 TTTY13Q9BZ97 58 aa13.12□□□□□ -0.31
CLN3-207ENST00000395653 TMEM238C9JI98 176 aa13.11□□□□□ -0.31
CLN3-207ENST00000395653 NCR3O14931 201 aa13.11□□□□□ -0.31
CLN3-207ENST00000395653 KRTAP13-1Q8IUC0 172 aa13.1□□□□□ -0.31
CLN3-207ENST00000395653 LITAFQ99732 161 aa13.1□□□□□ -0.31
CLN3-207ENST00000395653 TNXBP22105 4242 aa13.09□□□□□ -0.31
CLN3-207ENST00000395653 UBE2AP49459 152 aa13.09□□□□□ -0.31
CLN3-207ENST00000395653 TRBV10-2A0A0K0K1G8 114 aa13.08□□□□□ -0.32
CLN3-207ENST00000395653 NDUFC2O95298 119 aa13.08□□□□□ -0.32
CLN3-207ENST00000395653 KRTAP10-8P60410 259 aa13.08□□□□□ -0.32
CLN3-207ENST00000395653 KRTAP1-4P0C5Y4 121 aa13.07□□□□□ -0.32
CLN3-207ENST00000395653 SOSTDC1Q6X4U4 206 aa13.07□□□□□ -0.32
CLN3-207ENST00000395653 NPC2P61916 151 aa13.06□□□□□ -0.32
CLN3-207ENST00000395653 SPANXB1Q9NS25 103 aaPredicted RBP13.06□□□□□ -0.32
CLN3-207ENST00000395653 PRYO14603 147 aa13.05□□□□□ -0.32
CLN3-207ENST00000395653 FAM19A1Q7Z5A9 133 aa13.05□□□□□ -0.32
CLN3-207ENST00000395653 TRBV10-3A0A0K0K1G6 114 aa13.05□□□□□ -0.32
CLN3-207ENST00000395653 EIF4EBP3O60516 100 aaPredicted RBP13.05□□□□□ -0.32
CLN3-207ENST00000395653 KCNQ1DNQ9H478 68 aa13.05□□□□□ -0.32
CLN3-207ENST00000395653 PRLHP81277 87 aa13.04□□□□□ -0.32
CLN3-207ENST00000395653 SCGB1D4Q6XE38 83 aa13.04□□□□□ -0.32
CLN3-207ENST00000395653 LINC00308Q8TCZ7 52 aa13.04□□□□□ -0.32
CLN3-207ENST00000395653 HSBP1L1C9JCN9 74 aa13.02□□□□□ -0.33
CLN3-207ENST00000395653 S100A12P80511 92 aa13.02□□□□□ -0.33
CLN3-207ENST00000395653 PCP2Q8IVA1 136 aa13.02□□□□□ -0.33
CLN3-207ENST00000395653 DDTP30046 118 aa13.01□□□□□ -0.33
CLN3-207ENST00000395653 SPRR1AP35321 89 aa13.01□□□□□ -0.33
CLN3-207ENST00000395653 SPANXCQ9NY87 97 aa13.01□□□□□ -0.33
CLN3-207ENST00000395653 LINC00337Q8N6G1 96 aa13□□□□□ -0.33
CLN3-207ENST00000395653 PRR26Q8N8Z3 221 aa13□□□□□ -0.33
CLN3-207ENST00000395653 SCGB1D1O95968 90 aa12.99□□□□□ -0.33
CLN3-207ENST00000395653 SPANXDQ9BXN6 97 aa12.99□□□□□ -0.33
CLN3-207ENST00000395653 IGLV6-57P01721 117 aa12.98□□□□□ -0.33
CLN3-207ENST00000395653 KRTAP4-16G5E9R7 235 aaPredicted RBP12.97□□□□□ -0.33
CLN3-207ENST00000395653 S100A7L2Q5SY68 101 aa12.97□□□□□ -0.33
CLN3-207ENST00000395653 RPL13AP40429 203 aaKnown RBP12.96□□□□□ -0.34
CLN3-207ENST00000395653 Q6ZVH6 145 aa12.96□□□□□ -0.34
CLN3-207ENST00000395653 ETDCA0A1B0GVM5 59 aa12.95□□□□□ -0.34
CLN3-207ENST00000395653 COPS9Q8WXC6 57 aa12.95□□□□□ -0.34
CLN3-207ENST00000395653 PPDPFQ9H3Y8 114 aa12.95□□□□□ -0.34
CLN3-207ENST00000395653 HIGD2AQ9BW72 106 aa12.94□□□□□ -0.34
CLN3-207ENST00000395653 IFITM1P13164 125 aa12.93□□□□□ -0.34
CLN3-207ENST00000395653 TRAV23DV6A0A075B6W5 121 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms