RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 Q6ZVQ6 151 aa12.8□□□□□ -0.36
CLIP2-202ENST00000361545 H3BNG1 76 aa12.79□□□□□ -0.36
CLIP2-202ENST00000361545 LINC01547P58512 204 aaPredicted RBP12.79□□□□□ -0.36
CLIP2-202ENST00000361545 C6orf48Q9UBA6 75 aa12.79□□□□□ -0.36
CLIP2-202ENST00000361545 A6NED7 52 aa12.79□□□□□ -0.36
CLIP2-202ENST00000361545 LINC00588Q9Y4M8 146 aa12.77□□□□□ -0.37
CLIP2-202ENST00000361545 LINC00167Q96N53 147 aa12.77□□□□□ -0.37
CLIP2-202ENST00000361545 LINC00208Q96KT6 92 aa12.76□□□□□ -0.37
CLIP2-202ENST00000361545 NBDYA0A0U1RRE5 68 aa12.76□□□□□ -0.37
CLIP2-202ENST00000361545 SERP1Q9Y6X1 66 aa12.76□□□□□ -0.37
CLIP2-202ENST00000361545 SOSTDC1Q6X4U4 206 aa12.75□□□□□ -0.37
CLIP2-202ENST00000361545 TRAV7A0A075B6U4 112 aa12.74□□□□□ -0.37
CLIP2-202ENST00000361545 K7ERS5 55 aa12.73□□□□□ -0.37
CLIP2-202ENST00000361545 LINC01546A6NGU7 62 aa12.72□□□□□ -0.37
CLIP2-202ENST00000361545 PRR15LQ9BU68 103 aa12.71□□□□□ -0.37
CLIP2-202ENST00000361545 CDIP1Q9H305 208 aa12.71□□□□□ -0.37
CLIP2-202ENST00000361545 RTL8CO15255 209 aa12.71□□□□□ -0.38
CLIP2-202ENST00000361545 WWC2-AS2Q96NR7 200 aa12.71□□□□□ -0.38
CLIP2-202ENST00000361545 KIAA0087Q14695 138 aa12.7□□□□□ -0.38
CLIP2-202ENST00000361545 A0A096LNT2 108 aa12.69□□□□□ -0.38
CLIP2-202ENST00000361545 PHF5AQ7RTV0 110 aaKnown RBP12.69□□□□□ -0.38
CLIP2-202ENST00000361545 LIMD2Q9BT23 127 aa12.68□□□□□ -0.38
CLIP2-202ENST00000361545 C16orf90A8MZG2 172 aa12.67□□□□□ -0.38
CLIP2-202ENST00000361545 PCOTHQ58A44 107 aa12.67□□□□□ -0.38
CLIP2-202ENST00000361545 KRTAP10-11P60412 298 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 MOBPQ13875 183 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 SPACA4Q8TDM5 124 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 PMAIP1Q13794 54 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 KLK9Q2XQG4 91 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 IGLV5-45A0A087WSX0 123 aa12.66□□□□□ -0.38
CLIP2-202ENST00000361545 K7EIL1 84 aa12.65□□□□□ -0.38
CLIP2-202ENST00000361545 CHTF8P0CG12 524 aa12.64□□□□□ -0.39
CLIP2-202ENST00000361545 LINC00846Q9NV44 126 aa12.63□□□□□ -0.39
CLIP2-202ENST00000361545 FAM229AH3BQW9 127 aa12.62□□□□□ -0.39
CLIP2-202ENST00000361545 CHD7Q9P2D1 2997 aa12.61□□□□□ -0.39
CLIP2-202ENST00000361545 KRTAP10-3P60369 221 aa12.61□□□□□ -0.39
CLIP2-202ENST00000361545 PCNTO95613 3336 aa12.61□□□□□ -0.39
CLIP2-202ENST00000361545 C5orf42Q9H799 3197 aa12.61□□□□□ -0.39
CLIP2-202ENST00000361545 SPINK1P00995 79 aa12.61□□□□□ -0.39
CLIP2-202ENST00000361545 HCG22E2RYF7 251 aa12.6□□□□□ -0.39
CLIP2-202ENST00000361545 TRBV7-6A0A0J9YX20 115 aa12.59□□□□□ -0.39
CLIP2-202ENST00000361545 ATRQ13535 2644 aa12.59□□□□□ -0.39
CLIP2-202ENST00000361545 CSNK1G2-AS1Q8NCQ2 148 aa12.59□□□□□ -0.39
CLIP2-202ENST00000361545 MAST4O15021 2626 aa12.57□□□□□ -0.4
CLIP2-202ENST00000361545 H0Y9P7 68 aa12.57□□□□□ -0.4
CLIP2-202ENST00000361545 TRBV7-7A0A0K0K1E9 115 aa12.56□□□□□ -0.4
CLIP2-202ENST00000361545 DNAH10OSP0CZ25 163 aa12.56□□□□□ -0.4
CLIP2-202ENST00000361545 SPATA3Q8NHX4 192 aa12.56□□□□□ -0.4
CLIP2-202ENST00000361545 HELZ2Q9BYK8 2649 aaKnown RBP12.56□□□□□ -0.4
CLIP2-202ENST00000361545 EPM2AB3EWF7 344 aa12.55□□□□□ -0.4
CLIP2-202ENST00000361545 GVQW2A0A096LPI5 108 aaPredicted RBP12.55□□□□□ -0.4
CLIP2-202ENST00000361545 Q6ZRP5 223 aa12.55□□□□□ -0.4
CLIP2-202ENST00000361545 BPTFQ12830 3046 aa12.55□□□□□ -0.4
CLIP2-202ENST00000361545 PSPHP1O15172 72 aa12.55□□□□□ -0.4
CLIP2-202ENST00000361545 ELOF1P60002 83 aaKnown RBP12.53□□□□□ -0.4
CLIP2-202ENST00000361545 FAM218AQ96MZ4 157 aa12.53□□□□□ -0.4
CLIP2-202ENST00000361545 IGKV2D-30A0A075B6S6 120 aa12.53□□□□□ -0.4
CLIP2-202ENST00000361545 IGKV2-30P06310 120 aa12.53□□□□□ -0.4
CLIP2-202ENST00000361545 SMCPP49901 116 aaPredicted RBP12.52□□□□□ -0.4
CLIP2-202ENST00000361545 Q6ZRX8 168 aa12.52□□□□□ -0.4
CLIP2-202ENST00000361545 FLNAP21333 2647 aaKnown RBP12.52□□□□□ -0.4
CLIP2-202ENST00000361545 CRYGAP11844 174 aa12.52□□□□□ -0.41
CLIP2-202ENST00000361545 RANBP2P49792 3224 aaKnown RBP12.52□□□□□ -0.41
CLIP2-202ENST00000361545 ST20-AS1Q8NBB2 130 aa12.51□□□□□ -0.41
CLIP2-202ENST00000361545 KRTAP1-3Q8IUG1 177 aa12.51□□□□□ -0.41
CLIP2-202ENST00000361545 C19orf73Q9NVV2 129 aa12.5□□□□□ -0.41
CLIP2-202ENST00000361545 FAM168BA1KXE4 195 aa12.49□□□□□ -0.41
CLIP2-202ENST00000361545 TMEM254Q8TBM7 123 aa12.49□□□□□ -0.41
CLIP2-202ENST00000361545 TYMSOSQ8TAI1 123 aa12.49□□□□□ -0.41
CLIP2-202ENST00000361545 PRO0628Q9UI54 55 aa12.48□□□□□ -0.41
CLIP2-202ENST00000361545 ITPR3Q14573 2671 aa12.47□□□□□ -0.41
CLIP2-202ENST00000361545 PRO0461Q9UI25 63 aa12.47□□□□□ -0.41
CLIP2-202ENST00000361545 LINC00476Q8WZB0 136 aa12.47□□□□□ -0.41
CLIP2-202ENST00000361545 GIG44P09565 113 aaPredicted RBP12.46□□□□□ -0.42
CLIP2-202ENST00000361545 CENPEQ02224 2701 aa12.46□□□□□ -0.42
CLIP2-202ENST00000361545 SMIM29Q86T20 159 aa12.44□□□□□ -0.42
CLIP2-202ENST00000361545 CXCL6P80162 114 aa12.44□□□□□ -0.42
CLIP2-202ENST00000361545 Q8NBF4 154 aa12.43□□□□□ -0.42
CLIP2-202ENST00000361545 CFAP46Q8IYW2 2715 aa12.43□□□□□ -0.42
CLIP2-202ENST00000361545 BCE1O60756 84 aa12.43□□□□□ -0.42
CLIP2-202ENST00000361545 KRTAP1-1Q07627 177 aa12.43□□□□□ -0.42
CLIP2-202ENST00000361545 C1orf64Q8NEQ6 169 aa12.42□□□□□ -0.42
CLIP2-202ENST00000361545 C4orf26Q17RF5 130 aa12.4□□□□□ -0.42
CLIP2-202ENST00000361545 VPREB1P12018 145 aa12.4□□□□□ -0.42
CLIP2-202ENST00000361545 SERTAD4-AS1Q5TG53 156 aa12.4□□□□□ -0.42
CLIP2-202ENST00000361545 hDV103S1A0JD37 113 aa12.4□□□□□ -0.43
CLIP2-202ENST00000361545 RPL37AP61513 92 aaKnown RBP12.38□□□□□ -0.43
CLIP2-202ENST00000361545 PLA2G1BP04054 148 aaKnown RBP12.37□□□□□ -0.43
CLIP2-202ENST00000361545 RPS28P62857 69 aaKnown RBP12.36□□□□□ -0.43
CLIP2-202ENST00000361545 CHD9Q3L8U1 2897 aa12.36□□□□□ -0.43
CLIP2-202ENST00000361545 HTTP42858 3142 aa12.36□□□□□ -0.43
CLIP2-202ENST00000361545 LITAFQ99732 161 aa12.35□□□□□ -0.43
CLIP2-202ENST00000361545 TM2D3Q9BRN9 247 aa12.35□□□□□ -0.43
CLIP2-202ENST00000361545 J3QL48 77 aa12.34□□□□□ -0.43
CLIP2-202ENST00000361545 Q6ZQT0 140 aa12.34□□□□□ -0.43
CLIP2-202ENST00000361545 C7orf65Q6ZTY9 151 aa12.33□□□□□ -0.44
CLIP2-202ENST00000361545 LAMA3Q16787 3333 aa12.33□□□□□ -0.44
CLIP2-202ENST00000361545 IGLV6-57P01721 117 aa12.32□□□□□ -0.44
CLIP2-202ENST00000361545 PRR34Q9NV39 138 aa12.32□□□□□ -0.44
CLIP2-202ENST00000361545 LINC00313P59037 77 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms