RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NOTCH3Q9UM47 2321 aa5.99□□□□□ -1.45
UPF2-202ENST00000357604 CFC1BP0CG36 223 aa5.99□□□□□ -1.45
UPF2-202ENST00000357604 CFC1P0CG37 223 aa5.99□□□□□ -1.45
UPF2-202ENST00000357604 VPS25Q9BRG1 176 aa5.99□□□□□ -1.45
UPF2-202ENST00000357604 A0A087WYN8 130 aa5.98□□□□□ -1.45
UPF2-202ENST00000357604 SETXQ7Z333 2677 aaKnown RBP5.98□□□□□ -1.45
UPF2-202ENST00000357604 BCE1O60756 84 aa5.98□□□□□ -1.45
UPF2-202ENST00000357604 KRTAP1-5Q9BYS1 174 aa5.98□□□□□ -1.45
UPF2-202ENST00000357604 hADV29S1A0JD25 119 aa5.98□□□□□ -1.45
UPF2-202ENST00000357604 PHF5AQ7RTV0 110 aaKnown RBP5.97□□□□□ -1.45
UPF2-202ENST00000357604 PYY3Q5JQD4 70 aa5.96□□□□□ -1.45
UPF2-202ENST00000357604 C10orf25Q5T742 122 aa5.96□□□□□ -1.45
UPF2-202ENST00000357604 TRBV20-1A0A075B6N2 111 aa5.96□□□□□ -1.46
UPF2-202ENST00000357604 LINC00167Q96N53 147 aa5.96□□□□□ -1.46
UPF2-202ENST00000357604 PPDPFQ9H3Y8 114 aa5.96□□□□□ -1.46
UPF2-202ENST00000357604 SPENQ96T58 3664 aaKnown RBP5.96□□□□□ -1.46
UPF2-202ENST00000357604 SPACA4Q8TDM5 124 aa5.96□□□□□ -1.46
UPF2-202ENST00000357604 SMG1Q96Q15 3661 aaKnown RBP5.95□□□□□ -1.46
UPF2-202ENST00000357604 TRBV7-6A0A0J9YX20 115 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 LINC00310P59036 64 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 PLAC8Q9NZF1 115 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 TRBV10-3A0A0K0K1G6 114 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 CHTF8P0CG12 524 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 ADGRG4Q8IZF6 3080 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 A0A1B0GX51 115 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 KIAA0087Q14695 138 aa5.95□□□□□ -1.46
UPF2-202ENST00000357604 GAGE2AQ6NT46 116 aa5.94□□□□□ -1.46
UPF2-202ENST00000357604 DSCR8Q96T75 97 aa5.94□□□□□ -1.46
UPF2-202ENST00000357604 SPINK6Q6UWN8 80 aa5.94□□□□□ -1.46
UPF2-202ENST00000357604 IGLV5-37A0A075B6J1 123 aa5.94□□□□□ -1.46
UPF2-202ENST00000357604 LINC01620Q4KN68 170 aa5.94□□□□□ -1.46
UPF2-202ENST00000357604 Q6ZRN7 208 aaPredicted RBP5.94□□□□□ -1.46
UPF2-202ENST00000357604 MUC4Q99102 2169 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 TSPEAR-AS2P59090 65 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 RELNP78509 3460 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 SCXQ7RTU7 201 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 PPDPFLQ8WWR9 84 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 COL6A5A8TX70 2615 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 LIMD2Q9BT23 127 aa5.93□□□□□ -1.46
UPF2-202ENST00000357604 MAP1AP78559 2803 aaPredicted RBP5.92□□□□□ -1.46
UPF2-202ENST00000357604 SDIM1Q6ZPB5 146 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 NACAE9PAV3 2078 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 FUSP35637 526 aaKnown RBP eCLIP5.92□□□□□ -1.46
UPF2-202ENST00000357604 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.92□□□□□ -1.46
UPF2-202ENST00000357604 CRYGAP11844 174 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 LOC105371267A0A1B0GV96 52 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 H3BUT2 72 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 TMEM256-PLSCR3K7ERE1 68 aa5.92□□□□□ -1.46
UPF2-202ENST00000357604 C6orf99Q4VX62 202 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 SPCS1Q9Y6A9 102 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 SMR3BP02814 79 aaPredicted RBP5.91□□□□□ -1.46
UPF2-202ENST00000357604 PCP4P48539 62 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 A0A1B0GV72 72 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 KRTAP26-1Q6PEX3 210 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 TTTY13Q9BZ97 58 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 SS18L2Q9UHA2 77 aa5.91□□□□□ -1.46
UPF2-202ENST00000357604 IGLV7-43P04211 117 aa5.9□□□□□ -1.46
UPF2-202ENST00000357604 KRTAP10-2P60368 255 aa5.9□□□□□ -1.46
UPF2-202ENST00000357604 Q5VSD8 79 aa5.9□□□□□ -1.46
UPF2-202ENST00000357604 Q6JHZ5 121 aa5.9□□□□□ -1.46
UPF2-202ENST00000357604 ALMS1Q8TCU4 4167 aa5.9□□□□□ -1.47
UPF2-202ENST00000357604 IGLV1-50A0A075B6I6 118 aa5.9□□□□□ -1.47
UPF2-202ENST00000357604 TCL1BO95988 128 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 LINC00337Q8N6G1 96 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 TEX49A0A1B0GTD5 131 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 KRTAP10-1P60331 282 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 PRR3P79522 188 aaKnown RBP5.89□□□□□ -1.47
UPF2-202ENST00000357604 WFDC2Q14508 124 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 VPREB1P12018 145 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 C9orf129Q5T035 196 aaKnown RBP5.89□□□□□ -1.47
UPF2-202ENST00000357604 ZNF861PO60384 105 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 PDE6GP18545 87 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 SMCR5Q8TEV8 140 aa5.89□□□□□ -1.47
UPF2-202ENST00000357604 B5MCH6 92 aa5.88□□□□□ -1.47
UPF2-202ENST00000357604 IGLV9-49A0A0B4J1Y8 123 aa5.88□□□□□ -1.47
UPF2-202ENST00000357604 CIRBP-AS1Q8TBR5 109 aa5.88□□□□□ -1.47
UPF2-202ENST00000357604 SMIM11BQ8TCY0 68 aa5.88□□□□□ -1.47
UPF2-202ENST00000357604 FAM168BA1KXE4 195 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 JMJD7-PLA2G4BH0Y9G9 81 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 SERTAD4-AS1Q5TG53 156 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 SETD2Q9BYW2 2564 aaPredicted RBP5.87□□□□□ -1.47
UPF2-202ENST00000357604 ANK2Q01484 3957 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 C9orf118A6NHY6 69 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 ADAMTSL4-AS1Q5T5F5 129 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 TYMSOSQ8TAI1 123 aa5.87□□□□□ -1.47
UPF2-202ENST00000357604 CRYBG3Q68DQ2 2970 aa5.86□□□□□ -1.47
UPF2-202ENST00000357604 SPAG11AQ6PDA7 123 aa5.86□□□□□ -1.47
UPF2-202ENST00000357604 PRLHP81277 87 aa5.86□□□□□ -1.47
UPF2-202ENST00000357604 ANKRD29Q8N6D5 301 aa5.86□□□□□ -1.47
UPF2-202ENST00000357604 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.86□□□□□ -1.47
UPF2-202ENST00000357604 KCNQ1DNQ9H478 68 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 A0A1W2PNN7 141 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 BAALC-AS2P0C853 105 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 Q6ZRX8 168 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 Q8NBF4 154 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 Q9BRP9 147 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 TRACP01848 142 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 PSORS1C2Q9UIG4 136 aa5.85□□□□□ -1.47
UPF2-202ENST00000357604 K7ERJ3 54 aa5.84□□□□□ -1.47
UPF2-202ENST00000357604 DCHS2Q6V1P9 2916 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms