RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DPH3Q96FX2 82 aa10.02□□□□□ -0.81
CLN3-201ENST00000333496 C2orf48Q96LS8 159 aa10.02□□□□□ -0.81
CLN3-201ENST00000333496 SPAG11BQ08648 103 aa10.01□□□□□ -0.81
CLN3-201ENST00000333496 SPANXB1Q9NS25 103 aaPredicted RBP10.01□□□□□ -0.81
CLN3-201ENST00000333496 PLAC8Q9NZF1 115 aa10.01□□□□□ -0.81
CLN3-201ENST00000333496 A0A087WZ39 114 aa10□□□□□ -0.81
CLN3-201ENST00000333496 CAMK2N2Q96S95 79 aa10□□□□□ -0.81
CLN3-201ENST00000333496 A0A0J9YXV3 536 aa10□□□□□ -0.81
CLN3-201ENST00000333496 TMEM170BQ5T4T1 132 aa10□□□□□ -0.81
CLN3-201ENST00000333496 RNF151Q2KHN1 245 aa9.99□□□□□ -0.81
CLN3-201ENST00000333496 FAM19A3Q7Z5A8 133 aa9.99□□□□□ -0.81
CLN3-201ENST00000333496 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
CLN3-201ENST00000333496 VPS25Q9BRG1 176 aa9.98□□□□□ -0.81
CLN3-201ENST00000333496 LEPROTO15243 131 aa9.97□□□□□ -0.81
CLN3-201ENST00000333496 LGALS3P17931 250 aaKnown RBP9.97□□□□□ -0.81
CLN3-201ENST00000333496 RPL37AP61513 92 aaKnown RBP9.97□□□□□ -0.81
CLN3-201ENST00000333496 KIAA0087Q14695 138 aa9.97□□□□□ -0.81
CLN3-201ENST00000333496 PLEKHB2Q96CS7 222 aa9.97□□□□□ -0.81
CLN3-201ENST00000333496 LOC107984640A0A0U1RRK4 108 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 TINCRA0A1B0GVN0 87 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 TMEM223A0PJW6 202 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 F8W1H4 67 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 J3QQQ9 107 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 C10orf25Q5T742 122 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 LYRM7Q5U5X0 104 aa9.96□□□□□ -0.81
CLN3-201ENST00000333496 ZNF22P17026 224 aaPredicted RBP9.96□□□□□ -0.82
CLN3-201ENST00000333496 PKIGQ9Y2B9 76 aa9.96□□□□□ -0.82
CLN3-201ENST00000333496 F8WDY8 70 aa9.95□□□□□ -0.82
CLN3-201ENST00000333496 LINC01561Q8N1V8 128 aa9.95□□□□□ -0.82
CLN3-201ENST00000333496 LINC00474Q9P2X8 69 aa9.95□□□□□ -0.82
CLN3-201ENST00000333496 TSPEAR-AS2P59090 65 aa9.94□□□□□ -0.82
CLN3-201ENST00000333496 GAGE2BQ13066 116 aa9.94□□□□□ -0.82
CLN3-201ENST00000333496 UNQ6190/PRO20217Q6UXQ8 127 aa9.94□□□□□ -0.82
CLN3-201ENST00000333496 GEMIN7Q9H840 131 aaKnown RBP9.94□□□□□ -0.82
CLN3-201ENST00000333496 LRP1Q07954 4544 aaKnown RBP9.94□□□□□ -0.82
CLN3-201ENST00000333496 NDUFA1O15239 70 aa9.93□□□□□ -0.82
CLN3-201ENST00000333496 PCP4P48539 62 aa9.93□□□□□ -0.82
CLN3-201ENST00000333496 CDKN2A-AS1Q9UH64 79 aa9.93□□□□□ -0.82
CLN3-201ENST00000333496 HERVK_113P63121 156 aa9.93□□□□□ -0.82
CLN3-201ENST00000333496 C6orf48Q9UBA6 75 aa9.93□□□□□ -0.82
CLN3-201ENST00000333496 IGLV5-45A0A087WSX0 123 aa9.92□□□□□ -0.82
CLN3-201ENST00000333496 C2orf82Q6UX34 121 aa9.92□□□□□ -0.82
CLN3-201ENST00000333496 FAT3Q8TDW7 4589 aa9.92□□□□□ -0.82
CLN3-201ENST00000333496 TMEM238C9JI98 176 aa9.91□□□□□ -0.82
CLN3-201ENST00000333496 RPL18AQ02543 176 aaKnown RBP9.91□□□□□ -0.82
CLN3-201ENST00000333496 A0A1W2PNN7 141 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 J3QR89 54 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 TSPAN13O95857 204 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 TLX1NBP0CAT3 122 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 Q6ZRP5 223 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 H3BMG7 143 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 C7orf33Q8WU49 177 aa9.89□□□□□ -0.83
CLN3-201ENST00000333496 HERC1Q15751 4861 aa9.88□□□□□ -0.83
CLN3-201ENST00000333496 RPL24P83731 157 aaKnown RBP9.88□□□□□ -0.83
CLN3-201ENST00000333496 Q8IZM0 81 aa9.88□□□□□ -0.83
CLN3-201ENST00000333496 TOMM7Q9P0U1 55 aa9.88□□□□□ -0.83
CLN3-201ENST00000333496 TRBV30A0A0K0K1B3 111 aa9.87□□□□□ -0.83
CLN3-201ENST00000333496 KRTAP29-1A8MX34 341 aaPredicted RBP9.87□□□□□ -0.83
CLN3-201ENST00000333496 SPINK8P0C7L1 97 aa9.87□□□□□ -0.83
CLN3-201ENST00000333496 C9orf116Q5BN46 136 aaPredicted RBP9.87□□□□□ -0.83
CLN3-201ENST00000333496 DMBT1Q9UGM3 2413 aaPredicted RBP9.86□□□□□ -0.83
CLN3-201ENST00000333496 TRBV20-1A0A075B6N2 111 aa9.86□□□□□ -0.83
CLN3-201ENST00000333496 A0A0B4J2C4 111 aa9.86□□□□□ -0.83
CLN3-201ENST00000333496 SMIM1B2RUZ4 78 aa9.86□□□□□ -0.83
CLN3-201ENST00000333496 PRO0461Q9UI25 63 aa9.86□□□□□ -0.83
CLN3-201ENST00000333496 PRSS2P07478 247 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 C6orf226Q5I0X4 101 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 PRO1854Q9UHT4 67 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 A0A0J9YXY3 114 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 CFC1BP0CG36 223 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 CFC1P0CG37 223 aa9.85□□□□□ -0.83
CLN3-201ENST00000333496 LOC107984156A0A0G2JMH3 177 aa9.84□□□□□ -0.83
CLN3-201ENST00000333496 PRR3P79522 188 aaKnown RBP9.84□□□□□ -0.83
CLN3-201ENST00000333496 GAGE2EQ4V326 116 aa9.84□□□□□ -0.83
CLN3-201ENST00000333496 ARL17AQ8IVW1 177 aa9.84□□□□□ -0.83
CLN3-201ENST00000333496 GAGE2DQ9UEU5 116 aa9.84□□□□□ -0.83
CLN3-201ENST00000333496 FAM168BA1KXE4 195 aa9.83□□□□□ -0.84
CLN3-201ENST00000333496 CKS1BP61024 79 aa9.83□□□□□ -0.84
CLN3-201ENST00000333496 SPANXDQ9BXN6 97 aa9.83□□□□□ -0.84
CLN3-201ENST00000333496 SPANXCQ9NY87 97 aa9.83□□□□□ -0.84
CLN3-201ENST00000333496 IGLV5-39A0A0G2JS06 123 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 NDUFC2-KCTD14E9PQ53 114 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 C21orf62-AS1Q17RA5 79 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 KRTAP7-1Q8IUC3 87 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 A4D1N5 150 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 J3QL48 77 aa9.82□□□□□ -0.84
CLN3-201ENST00000333496 PHF5AQ7RTV0 110 aaKnown RBP9.82□□□□□ -0.84
CLN3-201ENST00000333496 TIMM17BO60830 172 aa9.81□□□□□ -0.84
CLN3-201ENST00000333496 PSMB2P49721 201 aa9.81□□□□□ -0.84
CLN3-201ENST00000333496 C9orf129Q5T035 196 aaKnown RBP9.81□□□□□ -0.84
CLN3-201ENST00000333496 COX7B2Q8TF08 81 aa9.81□□□□□ -0.84
CLN3-201ENST00000333496 NDUFA12Q9UI09 145 aa9.81□□□□□ -0.84
CLN3-201ENST00000333496 OXTP01178 125 aa9.8□□□□□ -0.84
CLN3-201ENST00000333496 ETDBQ3ZM63 59 aa9.8□□□□□ -0.84
CLN3-201ENST00000333496 MUSTN1Q8IVN3 82 aa9.8□□□□□ -0.84
CLN3-201ENST00000333496 CXCL5P42830 114 aa9.79□□□□□ -0.84
CLN3-201ENST00000333496 FAM19A5Q7Z5A7 132 aaPredicted RBP9.78□□□□□ -0.84
CLN3-201ENST00000333496 LITAFQ99732 161 aa9.78□□□□□ -0.84
CLN3-201ENST00000333496 ERG28Q9UKR5 140 aa9.78□□□□□ -0.84
CLN3-201ENST00000333496 M0QXV9 152 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms