RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 BEAN1Q3B7T3 259 aa10.85□□□□□ -0.67
SHH-201ENST00000297261 FAM19A4Q96LR4 140 aa10.85□□□□□ -0.67
SHH-201ENST00000297261 DCHS1Q96JQ0 3298 aa10.85□□□□□ -0.67
SHH-201ENST00000297261 FAM30AQ9NZY2 134 aa10.85□□□□□ -0.67
SHH-201ENST00000297261 WFDC10BQ8IUB3 73 aa10.85□□□□□ -0.67
SHH-201ENST00000297261 IGLV1-51P01701 117 aa10.84□□□□□ -0.67
SHH-201ENST00000297261 EIF4EBP3O60516 100 aaPredicted RBP10.84□□□□□ -0.67
SHH-201ENST00000297261 WFDC13Q8IUB5 93 aa10.84□□□□□ -0.67
SHH-201ENST00000297261 TRBV10-3A0A0K0K1G6 114 aa10.84□□□□□ -0.67
SHH-201ENST00000297261 Q6ZVQ6 151 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 ZFHX4Q86UP3 3567 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 IGKV2-24A0A0C4DH68 120 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 COX17Q14061 63 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 LITAFQ99732 161 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 LYRM9A8MSI8 78 aa10.83□□□□□ -0.68
SHH-201ENST00000297261 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.82□□□□□ -0.68
SHH-201ENST00000297261 SMCR5Q8TEV8 140 aa10.82□□□□□ -0.68
SHH-201ENST00000297261 MRPL55Q7Z7F7 128 aaKnown RBP10.82□□□□□ -0.68
SHH-201ENST00000297261 KRTAP1-3Q8IUG1 177 aa10.82□□□□□ -0.68
SHH-201ENST00000297261 LINC01547P58512 204 aaPredicted RBP10.81□□□□□ -0.68
SHH-201ENST00000297261 RPS28P62857 69 aaKnown RBP10.8□□□□□ -0.68
SHH-201ENST00000297261 NANOS2P60321 138 aaKnown RBP10.8□□□□□ -0.68
SHH-201ENST00000297261 TMEM254Q8TBM7 123 aa10.79□□□□□ -0.68
SHH-201ENST00000297261 M0R378 163 aa10.79□□□□□ -0.68
SHH-201ENST00000297261 A0A0J9YWU9 116 aa10.78□□□□□ -0.68
SHH-201ENST00000297261 SYCNQ0VAF6 134 aa10.78□□□□□ -0.68
SHH-201ENST00000297261 Q8N9L7 120 aa10.78□□□□□ -0.68
SHH-201ENST00000297261 IGHV3OR16-9A0A0B4J2B5 98 aa10.78□□□□□ -0.68
SHH-201ENST00000297261 C11orf72Q8NBR9 251 aa10.78□□□□□ -0.68
SHH-201ENST00000297261 RELNP78509 3460 aa10.77□□□□□ -0.68
SHH-201ENST00000297261 CHD6Q8TD26 2715 aa10.77□□□□□ -0.69
SHH-201ENST00000297261 IGLV5-45A0A087WSX0 123 aa10.77□□□□□ -0.69
SHH-201ENST00000297261 FHL2Q14192 279 aa10.77□□□□□ -0.69
SHH-201ENST00000297261 C6orf223Q8N319 242 aa10.77□□□□□ -0.69
SHH-201ENST00000297261 TRBV7-6A0A0J9YX20 115 aa10.76□□□□□ -0.69
SHH-201ENST00000297261 UBE2AP49459 152 aa10.76□□□□□ -0.69
SHH-201ENST00000297261 RPL37AP8A6NKH3 93 aa10.76□□□□□ -0.69
SHH-201ENST00000297261 PRYO14603 147 aa10.76□□□□□ -0.69
SHH-201ENST00000297261 LINC00575Q6W349 94 aa10.76□□□□□ -0.69
SHH-201ENST00000297261 CHKB-CPT1BH3BT56 60 aa10.75□□□□□ -0.69
SHH-201ENST00000297261 MUC7Q8TAX7 377 aa10.75□□□□□ -0.69
SHH-201ENST00000297261 PRO0628Q9UI54 55 aa10.74□□□□□ -0.69
SHH-201ENST00000297261 PSPHP1O15172 72 aa10.74□□□□□ -0.69
SHH-201ENST00000297261 IGKV4-1P06312 121 aa10.73□□□□□ -0.69
SHH-201ENST00000297261 OXLD1Q5BKU9 147 aa10.73□□□□□ -0.69
SHH-201ENST00000297261 A6NED7 52 aa10.72□□□□□ -0.69
SHH-201ENST00000297261 LELP1Q5T871 98 aa10.72□□□□□ -0.69
SHH-201ENST00000297261 PMAIP1Q13794 54 aa10.7□□□□□ -0.7
SHH-201ENST00000297261 LINC00208Q96KT6 92 aa10.69□□□□□ -0.7
SHH-201ENST00000297261 ITPR1Q14643 2758 aa10.68□□□□□ -0.7
SHH-201ENST00000297261 C1orf137Q5JT78 98 aa10.67□□□□□ -0.7
SHH-201ENST00000297261 KRTAP1-1Q07627 177 aa10.67□□□□□ -0.7
SHH-201ENST00000297261 KPRPQ5T749 579 aaPredicted RBP10.67□□□□□ -0.7
SHH-201ENST00000297261 IGHV4-30-4P0DP06 118 aa10.67□□□□□ -0.7
SHH-201ENST00000297261 ESRGQ1W209 222 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 LINC01561Q8N1V8 128 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 DHRS4-AS1Q9P1J3 65 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 DEFB131BA0A096LNP1 70 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 A0A1B0GUV1 79 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 UNC79Q9P2D8 2635 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 CR1P17927 2039 aa10.66□□□□□ -0.7
SHH-201ENST00000297261 TRAV10A0A0B4J240 114 aa10.65□□□□□ -0.7
SHH-201ENST00000297261 SPATA3Q8NHX4 192 aa10.65□□□□□ -0.7
SHH-201ENST00000297261 TEX15Q9BXT5 2789 aa10.65□□□□□ -0.7
SHH-201ENST00000297261 HRNRQ86YZ3 2850 aaPredicted RBP10.65□□□□□ -0.7
SHH-201ENST00000297261 C11orf45Q8TAV5 145 aa10.65□□□□□ -0.7
SHH-201ENST00000297261 BSNQ9UPA5 3926 aa10.64□□□□□ -0.71
SHH-201ENST00000297261 ZNF575Q86XF7 245 aa10.64□□□□□ -0.71
SHH-201ENST00000297261 CXCL6P80162 114 aa10.64□□□□□ -0.71
SHH-201ENST00000297261 EGFEM1PQ0D2K5 195 aa10.64□□□□□ -0.71
SHH-201ENST00000297261 TM2D3Q9BRN9 247 aa10.62□□□□□ -0.71
SHH-201ENST00000297261 DEFB116Q30KQ4 102 aa10.61□□□□□ -0.71
SHH-201ENST00000297261 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.6□□□□□ -0.71
SHH-201ENST00000297261 ATRQ13535 2644 aa10.59□□□□□ -0.71
SHH-201ENST00000297261 PRR15LQ9BU68 103 aa10.59□□□□□ -0.71
SHH-201ENST00000297261 Q6ZQT0 140 aa10.59□□□□□ -0.71
SHH-201ENST00000297261 B9D2Q9BPU9 175 aa10.58□□□□□ -0.72
SHH-201ENST00000297261 UTP20O75691 2785 aaKnown RBP10.58□□□□□ -0.72
SHH-201ENST00000297261 C10orf25Q5T742 122 aa10.58□□□□□ -0.72
SHH-201ENST00000297261 RETNQ9HD89 108 aa10.57□□□□□ -0.72
SHH-201ENST00000297261 C9orf129Q5T035 196 aaKnown RBP10.56□□□□□ -0.72
SHH-201ENST00000297261 SMIM29Q86T20 159 aa10.55□□□□□ -0.72
SHH-201ENST00000297261 SMG1Q96Q15 3661 aaKnown RBP10.55□□□□□ -0.72
SHH-201ENST00000297261 ASH1LQ9NR48 2969 aaKnown RBP10.54□□□□□ -0.72
SHH-201ENST00000297261 BCE1O60756 84 aa10.54□□□□□ -0.72
SHH-201ENST00000297261 Q6ZRU5 148 aa10.54□□□□□ -0.72
SHH-201ENST00000297261 A0A087WSZ3 146 aa10.53□□□□□ -0.72
SHH-201ENST00000297261 KRTAP10-3P60369 221 aa10.53□□□□□ -0.72
SHH-201ENST00000297261 SEC61GP60059 68 aa10.52□□□□□ -0.73
SHH-201ENST00000297261 LINC00474Q9P2X8 69 aa10.52□□□□□ -0.73
SHH-201ENST00000297261 ZANQ9Y493 2812 aa10.52□□□□□ -0.73
SHH-201ENST00000297261 LINC00336Q6ZUF6 198 aa10.52□□□□□ -0.73
SHH-201ENST00000297261 DCHS2Q6V1P9 2916 aa10.51□□□□□ -0.73
SHH-201ENST00000297261 KRTAP24-1Q3LI83 254 aa10.51□□□□□ -0.73
SHH-201ENST00000297261 CRYBG3Q68DQ2 2970 aa10.51□□□□□ -0.73
SHH-201ENST00000297261 SPINK6Q6UWN8 80 aa10.51□□□□□ -0.73
SHH-201ENST00000297261 KIAA0087Q14695 138 aa10.5□□□□□ -0.73
SHH-201ENST00000297261 PCOTHQ58A44 107 aa10.5□□□□□ -0.73
SHH-201ENST00000297261 ITPR2Q14571 2701 aa10.48□□□□□ -0.73
SHH-201ENST00000297261 LOC110117498A0A087WWA1 95 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms