RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 J3QQQ9 107 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 C3orf79P0CE67 100 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 HNRNPA3P51991 378 aaKnown RBP4.07□□□□□ -1.76
CD44-204ENST00000279452 HERV-K104P63124 156 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 COX17Q14061 63 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 LBHQ53QV2 105 aaPredicted RBP4.07□□□□□ -1.76
CD44-204ENST00000279452 COA6Q5JTJ3 125 aaKnown RBP4.07□□□□□ -1.76
CD44-204ENST00000279452 SND1-IT1Q9HBX3 110 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 SMIM13P0DJ93 91 aa4.06□□□□□ -1.76
CD44-204ENST00000279452 TSPEAR-AS2P59090 65 aa4.06□□□□□ -1.76
CD44-204ENST00000279452 KRTAP10-4P60372 401 aaPredicted RBP4.06□□□□□ -1.76
CD44-204ENST00000279452 LINC01545Q5VT33 79 aa4.06□□□□□ -1.76
CD44-204ENST00000279452 MRPL55Q7Z7F7 128 aaKnown RBP4.06□□□□□ -1.76
CD44-204ENST00000279452 PSORS1C2Q9UIG4 136 aa4.06□□□□□ -1.76
CD44-204ENST00000279452 C22orf24Q9Y442 160 aa4.06□□□□□ -1.76
CD44-204ENST00000279452 RPL37AP8A6NKH3 93 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 LINC00587B1AMM8 73 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 RPL24P83731 157 aaKnown RBP4.05□□□□□ -1.76
CD44-204ENST00000279452 KRTAP7-1Q8IUC3 87 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 ATOH7Q8N100 152 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 MIR7-3HGQ8N6C7 128 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 MIEN1Q9BRT3 115 aa4.05□□□□□ -1.76
CD44-204ENST00000279452 IGKV2-28A0A075B6P5 120 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 E9PLD3 99 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 IGKV2D-28P01615 120 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 NMUP48645 174 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 BOD1L2Q8IYS8 172 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 HIST3H2BBQ8N257 126 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 DAND5Q8N907 189 aa4.04□□□□□ -1.76
CD44-204ENST00000279452 ZNF815PA8K554 130 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 NCR3O14931 201 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 IGLV7-43P04211 117 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 NPC2P61916 151 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 SNRPEP62304 92 aaKnown RBP4.03□□□□□ -1.76
CD44-204ENST00000279452 REG3GQ6UW15 175 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 SPINK6Q6UWN8 80 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 KRTAP11-1Q8IUC1 163 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 LINC00167Q96N53 147 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 HIST1H2BLQ99880 126 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 TP73-AS1Q9UF72 201 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 PLA2G2DQ9UNK4 145 aa4.03□□□□□ -1.76
CD44-204ENST00000279452 A0A0J9YXY3 114 aa4.02□□□□□ -1.77
CD44-204ENST00000279452 HSBP1L1C9JCN9 74 aa4.02□□□□□ -1.77
CD44-204ENST00000279452 VPREB1P12018 145 aa4.02□□□□□ -1.77
CD44-204ENST00000279452 AKR1D1P51857 326 aa4.02□□□□□ -1.77
CD44-204ENST00000279452 SCGB1D4Q6XE38 83 aa4.02□□□□□ -1.77
CD44-204ENST00000279452 IGLV5-37A0A075B6J1 123 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 IGKV2D-26A0A0A0MRZ7 120 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 KRTAP29-1A8MX34 341 aaPredicted RBP4.01□□□□□ -1.77
CD44-204ENST00000279452 SCGB1D1O95968 90 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 OXTP01178 125 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 UBE2AP49459 152 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 DIRC1Q969H9 104 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 TTTY13Q9BZ97 58 aa4.01□□□□□ -1.77
CD44-204ENST00000279452 FAT1Q14517 4588 aa4□□□□□ -1.77
CD44-204ENST00000279452 TMEM238C9JI98 176 aa4□□□□□ -1.77
CD44-204ENST00000279452 M0R378 163 aa4□□□□□ -1.77
CD44-204ENST00000279452 BCE1O60756 84 aa4□□□□□ -1.77
CD44-204ENST00000279452 RPL28P46779 137 aaKnown RBP4□□□□□ -1.77
CD44-204ENST00000279452 S100A12P80511 92 aa4□□□□□ -1.77
CD44-204ENST00000279452 FAM19A1Q7Z5A9 133 aa4□□□□□ -1.77
CD44-204ENST00000279452 Q8NDZ9 215 aa4□□□□□ -1.77
CD44-204ENST00000279452 DNAH8Q96JB1 4490 aa4□□□□□ -1.77
CD44-204ENST00000279452 ABCA13Q86UQ4 5058 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 IGLV1-50A0A075B6I6 118 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 C5orf52A6NGY3 159 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 H0Y9J4 135 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 PRLHP81277 87 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 SRSF9Q13242 221 aaKnown RBP eCLIP3.99□□□□□ -1.77
CD44-204ENST00000279452 S100A7L2Q5SY68 101 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 CBY1Q9Y3M2 126 aa3.99□□□□□ -1.77
CD44-204ENST00000279452 PCLOQ9Y6V0 5065 aa3.98□□□□□ -1.77
CD44-204ENST00000279452 ZNF861PO60384 105 aa3.98□□□□□ -1.77
CD44-204ENST00000279452 ADAMTSL4-AS1Q5T5F5 129 aa3.98□□□□□ -1.77
CD44-204ENST00000279452 PCP2Q8IVA1 136 aa3.98□□□□□ -1.77
CD44-204ENST00000279452 TMEM126AQ9H061 195 aa3.98□□□□□ -1.77
CD44-204ENST00000279452 SPANXB1Q9NS25 103 aaPredicted RBP3.98□□□□□ -1.77
CD44-204ENST00000279452 TRBV10-3A0A0K0K1G6 114 aa3.97□□□□□ -1.77
CD44-204ENST00000279452 DDTP30046 118 aa3.97□□□□□ -1.77
CD44-204ENST00000279452 OR13C6PQ8NH95 151 aa3.97□□□□□ -1.77
CD44-204ENST00000279452 HIGD2AQ9BW72 106 aa3.97□□□□□ -1.77
CD44-204ENST00000279452 ETDCA0A1B0GVM5 59 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 PRYO14603 147 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 TIMM17BO60830 172 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 SOSTDC1Q6X4U4 206 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 LINC00308Q8TCZ7 52 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 LINC01600Q96MT4 127 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 LITAFQ99732 161 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 SPANXCQ9NY87 97 aa3.96□□□□□ -1.78
CD44-204ENST00000279452 TRBV10-2A0A0K0K1G8 114 aa3.95□□□□□ -1.78
CD44-204ENST00000279452 EIF4EBP3O60516 100 aaPredicted RBP3.95□□□□□ -1.78
CD44-204ENST00000279452 NDUFC2O95298 119 aa3.95□□□□□ -1.78
CD44-204ENST00000279452 PRR26Q8N8Z3 221 aa3.95□□□□□ -1.78
CD44-204ENST00000279452 COPS9Q8WXC6 57 aa3.95□□□□□ -1.78
CD44-204ENST00000279452 TRAV23DV6A0A075B6W5 121 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 LOC107984156A0A0G2JMH3 177 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 ARL17AQ8IVW1 177 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 VAMP8Q9BV40 100 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 SPANXDQ9BXN6 97 aa3.94□□□□□ -1.78
CD44-204ENST00000279452 KRTAP4-8Q9BYQ9 185 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms