RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 PCOTHQ58A44 107 aa12.66□□□□□ -0.38
CLIP2-201ENST00000223398 CHTF8P0CG12 524 aa12.66□□□□□ -0.38
CLIP2-201ENST00000223398 PRRC2CQ9Y520 2896 aaKnown RBP12.66□□□□□ -0.38
CLIP2-201ENST00000223398 IGLV5-39A0A0G2JS06 123 aa12.66□□□□□ -0.38
CLIP2-201ENST00000223398 LIMD2Q9BT23 127 aa12.66□□□□□ -0.38
CLIP2-201ENST00000223398 SPINK1P00995 79 aa12.65□□□□□ -0.38
CLIP2-201ENST00000223398 IMUPQ9GZP8 106 aa12.65□□□□□ -0.38
CLIP2-201ENST00000223398 FAM229AH3BQW9 127 aa12.65□□□□□ -0.38
CLIP2-201ENST00000223398 MOBPQ13875 183 aa12.65□□□□□ -0.38
CLIP2-201ENST00000223398 KIAA0087Q14695 138 aa12.64□□□□□ -0.39
CLIP2-201ENST00000223398 KRTAP10-11P60412 298 aa12.63□□□□□ -0.39
CLIP2-201ENST00000223398 NDUFC1O43677 76 aa12.61□□□□□ -0.39
CLIP2-201ENST00000223398 K7EIL1 84 aa12.61□□□□□ -0.39
CLIP2-201ENST00000223398 Q6Q795 121 aa12.61□□□□□ -0.39
CLIP2-201ENST00000223398 COX7CP15954 63 aa12.59□□□□□ -0.39
CLIP2-201ENST00000223398 CCDC179H3BU77 68 aa12.58□□□□□ -0.4
CLIP2-201ENST00000223398 HCG22E2RYF7 251 aa12.57□□□□□ -0.4
CLIP2-201ENST00000223398 TRBV7-6A0A0J9YX20 115 aa12.57□□□□□ -0.4
CLIP2-201ENST00000223398 A6NED7 52 aa12.56□□□□□ -0.4
CLIP2-201ENST00000223398 MGAM2Q2M2H8 2515 aa12.56□□□□□ -0.4
CLIP2-201ENST00000223398 CEP350Q5VT06 3117 aa12.56□□□□□ -0.4
CLIP2-201ENST00000223398 KRTAP10-3P60369 221 aa12.56□□□□□ -0.4
CLIP2-201ENST00000223398 USP24Q9UPU5 2620 aa12.55□□□□□ -0.4
CLIP2-201ENST00000223398 A0A096LNT2 108 aa12.55□□□□□ -0.4
CLIP2-201ENST00000223398 IGKV2D-30A0A075B6S6 120 aa12.54□□□□□ -0.4
CLIP2-201ENST00000223398 IGKV2-30P06310 120 aa12.54□□□□□ -0.4
CLIP2-201ENST00000223398 FAM240AA0A1B0GVK7 77 aa12.54□□□□□ -0.4
CLIP2-201ENST00000223398 H0Y9P7 68 aa12.53□□□□□ -0.4
CLIP2-201ENST00000223398 TRAV7A0A075B6U4 112 aa12.53□□□□□ -0.4
CLIP2-201ENST00000223398 ATP5EP56381 51 aaPredicted RBP12.52□□□□□ -0.4
CLIP2-201ENST00000223398 LINC00846Q9NV44 126 aa12.52□□□□□ -0.4
CLIP2-201ENST00000223398 LINC01546A6NGU7 62 aa12.52□□□□□ -0.4
CLIP2-201ENST00000223398 Q6ZRP5 223 aa12.51□□□□□ -0.41
CLIP2-201ENST00000223398 A0A0U1RQV1 116 aa12.51□□□□□ -0.41
CLIP2-201ENST00000223398 V9GYY9 64 aa12.51□□□□□ -0.41
CLIP2-201ENST00000223398 EPM2AB3EWF7 344 aa12.51□□□□□ -0.41
CLIP2-201ENST00000223398 DNAH10OSP0CZ25 163 aa12.49□□□□□ -0.41
CLIP2-201ENST00000223398 SOSTDC1Q6X4U4 206 aa12.49□□□□□ -0.41
CLIP2-201ENST00000223398 TYMSOSQ8TAI1 123 aa12.49□□□□□ -0.41
CLIP2-201ENST00000223398 CRYGAP11844 174 aa12.49□□□□□ -0.41
CLIP2-201ENST00000223398 IGLV5-45A0A087WSX0 123 aa12.48□□□□□ -0.41
CLIP2-201ENST00000223398 ST20-AS1Q8NBB2 130 aa12.47□□□□□ -0.41
CLIP2-201ENST00000223398 SPATA3Q8NHX4 192 aa12.47□□□□□ -0.41
CLIP2-201ENST00000223398 FAM168BA1KXE4 195 aa12.46□□□□□ -0.41
CLIP2-201ENST00000223398 CSNK1G2-AS1Q8NCQ2 148 aa12.46□□□□□ -0.41
CLIP2-201ENST00000223398 J3QL48 77 aa12.45□□□□□ -0.42
CLIP2-201ENST00000223398 GVQW2A0A096LPI5 108 aaPredicted RBP12.45□□□□□ -0.42
CLIP2-201ENST00000223398 ELOF1P60002 83 aaKnown RBP12.43□□□□□ -0.42
CLIP2-201ENST00000223398 Q6ZRX8 168 aa12.43□□□□□ -0.42
CLIP2-201ENST00000223398 KLK9Q2XQG4 91 aa12.43□□□□□ -0.42
CLIP2-201ENST00000223398 FAM218AQ96MZ4 157 aa12.42□□□□□ -0.42
CLIP2-201ENST00000223398 TRBV7-7A0A0K0K1E9 115 aa12.41□□□□□ -0.42
CLIP2-201ENST00000223398 C19orf73Q9NVV2 129 aa12.41□□□□□ -0.42
CLIP2-201ENST00000223398 RPL37AP61513 92 aaKnown RBP12.4□□□□□ -0.42
CLIP2-201ENST00000223398 LINC00476Q8WZB0 136 aa12.4□□□□□ -0.42
CLIP2-201ENST00000223398 KRTAP1-3Q8IUG1 177 aa12.39□□□□□ -0.43
CLIP2-201ENST00000223398 PLA2G1BP04054 148 aaKnown RBP12.39□□□□□ -0.43
CLIP2-201ENST00000223398 SMIM29Q86T20 159 aa12.38□□□□□ -0.43
CLIP2-201ENST00000223398 Q8NBF4 154 aa12.38□□□□□ -0.43
CLIP2-201ENST00000223398 C1orf64Q8NEQ6 169 aa12.37□□□□□ -0.43
CLIP2-201ENST00000223398 BCE1O60756 84 aa12.37□□□□□ -0.43
CLIP2-201ENST00000223398 hDV103S1A0JD37 113 aa12.34□□□□□ -0.43
CLIP2-201ENST00000223398 C7orf65Q6ZTY9 151 aa12.34□□□□□ -0.43
CLIP2-201ENST00000223398 SMR3BP02814 79 aaPredicted RBP12.34□□□□□ -0.43
CLIP2-201ENST00000223398 SERTAD4-AS1Q5TG53 156 aa12.34□□□□□ -0.43
CLIP2-201ENST00000223398 TMEM254Q8TBM7 123 aa12.34□□□□□ -0.43
CLIP2-201ENST00000223398 C5orf42Q9H799 3197 aa12.33□□□□□ -0.43
CLIP2-201ENST00000223398 GIG44P09565 113 aaPredicted RBP12.33□□□□□ -0.44
CLIP2-201ENST00000223398 ATRQ13535 2644 aa12.32□□□□□ -0.44
CLIP2-201ENST00000223398 KRTAP1-1Q07627 177 aa12.32□□□□□ -0.44
CLIP2-201ENST00000223398 CXCL6P80162 114 aa12.31□□□□□ -0.44
CLIP2-201ENST00000223398 HELZ2Q9BYK8 2649 aaKnown RBP12.31□□□□□ -0.44
CLIP2-201ENST00000223398 BPTFQ12830 3046 aa12.29□□□□□ -0.44
CLIP2-201ENST00000223398 MAST4O15021 2626 aa12.29□□□□□ -0.44
CLIP2-201ENST00000223398 VPREB1P12018 145 aa12.29□□□□□ -0.44
CLIP2-201ENST00000223398 LINC00313P59037 77 aa12.29□□□□□ -0.44
CLIP2-201ENST00000223398 Q96NJ1 140 aa12.27□□□□□ -0.44
CLIP2-201ENST00000223398 FLNAP21333 2647 aaKnown RBP12.27□□□□□ -0.45
CLIP2-201ENST00000223398 CHD7Q9P2D1 2997 aa12.27□□□□□ -0.45
CLIP2-201ENST00000223398 PSPHP1O15172 72 aa12.26□□□□□ -0.45
CLIP2-201ENST00000223398 TM2D3Q9BRN9 247 aa12.26□□□□□ -0.45
CLIP2-201ENST00000223398 SMIM26A0A096LP01 95 aa12.26□□□□□ -0.45
CLIP2-201ENST00000223398 A0A087WTM6 91 aa12.24□□□□□ -0.45
CLIP2-201ENST00000223398 ITPR3Q14573 2671 aa12.23□□□□□ -0.45
CLIP2-201ENST00000223398 Q6ZQT0 140 aa12.22□□□□□ -0.45
CLIP2-201ENST00000223398 C15orf56Q8N910 161 aa12.22□□□□□ -0.45
CLIP2-201ENST00000223398 PCNTO95613 3336 aa12.22□□□□□ -0.45
CLIP2-201ENST00000223398 SMCPP49901 116 aaPredicted RBP12.21□□□□□ -0.45
CLIP2-201ENST00000223398 IGLV1-50A0A075B6I6 118 aa12.21□□□□□ -0.45
CLIP2-201ENST00000223398 ATP11AUNQ6ZP68 121 aa12.19□□□□□ -0.46
CLIP2-201ENST00000223398 IGLV6-57P01721 117 aa12.19□□□□□ -0.46
CLIP2-201ENST00000223398 TP53AIP1Q9HCN2 124 aa12.19□□□□□ -0.46
CLIP2-201ENST00000223398 LITAFQ99732 161 aa12.19□□□□□ -0.46
CLIP2-201ENST00000223398 PRR34Q9NV39 138 aa12.18□□□□□ -0.46
CLIP2-201ENST00000223398 CFAP46Q8IYW2 2715 aa12.17□□□□□ -0.46
CLIP2-201ENST00000223398 CDIP1Q9H305 208 aa12.17□□□□□ -0.46
CLIP2-201ENST00000223398 CASC10Q5T4H9 136 aa12.16□□□□□ -0.46
CLIP2-201ENST00000223398 APLNQ9ULZ1 77 aa12.15□□□□□ -0.46
CLIP2-201ENST00000223398 RANBP2P49792 3224 aaKnown RBP12.15□□□□□ -0.46
CLIP2-201ENST00000223398 ANAPC11Q9NYG5 84 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms