RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TTC32Q5I0X7 151 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 LINC00308Q8TCZ7 52 aa7.38□□□□□ -1.23
CUX1-221ENST00000622516 C9JAW5 83 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 BAHCC1Q9P281 2608 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 IGLV10-54A0A075B6I4 117 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 GAGE2BQ13066 116 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 GAGE2EQ4V326 116 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 Q8NAQ8 132 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 CARD19Q96LW7 228 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 RETNQ9HD89 108 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 GAGE2DQ9UEU5 116 aa7.37□□□□□ -1.23
CUX1-221ENST00000622516 IGHV3OR16-9A0A0B4J2B5 98 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 TEN1Q86WV5 123 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 WFDC9Q8NEX5 89 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 LINC00959A0A1B0GUT2 108 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 H7C423 109 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 RPL13AP40429 203 aaKnown RBP7.36□□□□□ -1.23
CUX1-221ENST00000622516 COX7B2Q8TF08 81 aa7.36□□□□□ -1.23
CUX1-221ENST00000622516 LYRM9A8MSI8 78 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 CLEC2BQ92478 149 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 SNCGO76070 127 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 KRTAP24-1Q3LI83 254 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 LINC00269Q8N2A0 174 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 ICOSQ9Y6W8 199 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 PFN2P35080 140 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 KRTAP10-11P60412 298 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 LYRM7Q5U5X0 104 aa7.35□□□□□ -1.23
CUX1-221ENST00000622516 TIMM17BO60830 172 aa7.34□□□□□ -1.23
CUX1-221ENST00000622516 ZNF561-AS1K7EIQ3 104 aa7.34□□□□□ -1.23
CUX1-221ENST00000622516 MIR7-3HGQ8N6C7 128 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 A0A1B0GX51 115 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 SLC25A20O43772 301 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 ANGP03950 147 aaKnown RBP7.33□□□□□ -1.24
CUX1-221ENST00000622516 ATP5G1P05496 136 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 LINC00158P58513 81 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 C2orf82Q6UX34 121 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 C3orf56Q8N813 242 aa7.33□□□□□ -1.24
CUX1-221ENST00000622516 MGAM2Q2M2H8 2515 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 A0A087WZ39 114 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 TRBV30A0A0K0K1B3 111 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 SPART-AS1P0CW21 52 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 MIFP14174 115 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 ANKRD29Q8N6D5 301 aa7.32□□□□□ -1.24
CUX1-221ENST00000622516 C6orf226Q5I0X4 101 aa7.31□□□□□ -1.24
CUX1-221ENST00000622516 RPS28P62857 69 aaKnown RBP7.31□□□□□ -1.24
CUX1-221ENST00000622516 SS18Q15532 418 aa7.31□□□□□ -1.24
CUX1-221ENST00000622516 A0A1B0GUV1 79 aa7.3□□□□□ -1.24
CUX1-221ENST00000622516 CYSRT1A8MQ03 144 aa7.3□□□□□ -1.24
CUX1-221ENST00000622516 ATXN8Q156A1 80 aa7.3□□□□□ -1.24
CUX1-221ENST00000622516 LINC01620Q4KN68 170 aa7.3□□□□□ -1.24
CUX1-221ENST00000622516 Q6Q795 121 aa7.3□□□□□ -1.24
CUX1-221ENST00000622516 V9GYY9 64 aa7.29□□□□□ -1.24
CUX1-221ENST00000622516 PRB2P02812 416 aaPredicted RBP7.29□□□□□ -1.24
CUX1-221ENST00000622516 LINC00526Q96FQ7 95 aa7.29□□□□□ -1.24
CUX1-221ENST00000622516 COX6CP09669 75 aa7.29□□□□□ -1.24
CUX1-221ENST00000622516 REG3AQ06141 175 aa7.29□□□□□ -1.24
CUX1-221ENST00000622516 CHCHD10Q8WYQ3 142 aaPredicted RBP7.28□□□□□ -1.24
CUX1-221ENST00000622516 NTN5Q8WTR8 489 aaPredicted RBP7.28□□□□□ -1.24
CUX1-221ENST00000622516 SND1-IT1Q9HBX3 110 aa7.28□□□□□ -1.24
CUX1-221ENST00000622516 TEX49A0A1B0GTD5 131 aa7.27□□□□□ -1.25
CUX1-221ENST00000622516 LINC00337Q8N6G1 96 aa7.27□□□□□ -1.25
CUX1-221ENST00000622516 PRO0628Q9UI54 55 aa7.27□□□□□ -1.25
CUX1-221ENST00000622516 CCL18P55774 89 aa7.27□□□□□ -1.25
CUX1-221ENST00000622516 C9orf116Q5BN46 136 aaPredicted RBP7.27□□□□□ -1.25
CUX1-221ENST00000622516 KLK12Q9UKR0 248 aa7.27□□□□□ -1.25
CUX1-221ENST00000622516 IGKV2-28A0A075B6P5 120 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 IGKV2D-28P01615 120 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 C4orf48Q5BLP8 95 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 HRCT1Q6UXD1 115 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 Q6ZTC4 211 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 MALP21145 153 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 PRR3P79522 188 aaKnown RBP7.26□□□□□ -1.25
CUX1-221ENST00000622516 C4orf26Q17RF5 130 aa7.26□□□□□ -1.25
CUX1-221ENST00000622516 LST1O00453 97 aa7.25□□□□□ -1.25
CUX1-221ENST00000622516 TRBV10-2A0A0K0K1G8 114 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 COX7A2LO14548 114 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 CD164L2Q6UWJ8 174 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 C6orf223Q8N319 242 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 C15orf53Q8NAA6 179 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 COPS9Q8WXC6 57 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 FAM218AQ96MZ4 157 aa7.24□□□□□ -1.25
CUX1-221ENST00000622516 IBA57-AS1B1ANH7 110 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 CRPP02741 224 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 LYPD5Q6UWN5 251 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 LELP1Q5T871 98 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 DNAH3Q8TD57 4116 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 TRAV8-4A0A0B4J246 113 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 A0A0J9YWU9 116 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 NANOS2P60321 138 aaKnown RBP7.23□□□□□ -1.25
CUX1-221ENST00000622516 WFDC10BQ8IUB3 73 aa7.23□□□□□ -1.25
CUX1-221ENST00000622516 KIAA0087Q14695 138 aa7.22□□□□□ -1.25
CUX1-221ENST00000622516 KPRPQ5T749 579 aaPredicted RBP7.22□□□□□ -1.25
CUX1-221ENST00000622516 Q8IZM0 81 aa7.22□□□□□ -1.25
CUX1-221ENST00000622516 Q9HAA7 133 aa7.22□□□□□ -1.25
CUX1-221ENST00000622516 PKIGQ9Y2B9 76 aa7.22□□□□□ -1.25
CUX1-221ENST00000622516 UBE2WQ96B02 151 aa7.22□□□□□ -1.25
CUX1-221ENST00000622516 C10orf25Q5T742 122 aa7.21□□□□□ -1.25
CUX1-221ENST00000622516 C9orf153Q5TBE3 101 aa7.21□□□□□ -1.25
CUX1-221ENST00000622516 ENHOQ6UWT2 76 aa7.21□□□□□ -1.26
CUX1-221ENST00000622516 SMIM11BQ8TCY0 68 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms