RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 VPS13DQ5THJ4 4388 aa13.8□□□□□ -0.2
PNKP-203ENST00000593946 SRSF9Q13242 221 aaKnown RBP eCLIP13.8□□□□□ -0.2
PNKP-203ENST00000593946 BATFQ16520 125 aa13.8□□□□□ -0.2
PNKP-203ENST00000593946 TTC32Q5I0X7 151 aa13.8□□□□□ -0.2
PNKP-203ENST00000593946 CEND1Q8N111 149 aa13.8□□□□□ -0.2
PNKP-203ENST00000593946 C15orf56Q8N910 161 aa13.8□□□□□ -0.2
PNKP-203ENST00000593946 NBDYA0A0U1RRE5 68 aa13.79□□□□□ -0.2
PNKP-203ENST00000593946 CKS1BP61024 79 aa13.79□□□□□ -0.2
PNKP-203ENST00000593946 C2orf82Q6UX34 121 aa13.79□□□□□ -0.2
PNKP-203ENST00000593946 TM2D2Q9BX73 214 aa13.79□□□□□ -0.2
PNKP-203ENST00000593946 GCSHP23434 173 aa13.78□□□□□ -0.2
PNKP-203ENST00000593946 ADAMTSL4-AS1Q5T5F5 129 aa13.78□□□□□ -0.2
PNKP-203ENST00000593946 COX11Q9Y6N1 276 aa13.78□□□□□ -0.2
PNKP-203ENST00000593946 SPANXDQ9BXN6 97 aa13.78□□□□□ -0.2
PNKP-203ENST00000593946 SPANXCQ9NY87 97 aa13.78□□□□□ -0.2
PNKP-203ENST00000593946 C3orf84H3BNL1 204 aa13.77□□□□□ -0.21
PNKP-203ENST00000593946 CIRBPQ14011 172 aaKnown RBP13.77□□□□□ -0.21
PNKP-203ENST00000593946 MEIG1Q5JSS6 88 aa13.77□□□□□ -0.21
PNKP-203ENST00000593946 FXYD2P54710 66 aa13.76□□□□□ -0.21
PNKP-203ENST00000593946 C6orf223Q8N319 242 aa13.76□□□□□ -0.21
PNKP-203ENST00000593946 LINC00526Q96FQ7 95 aa13.76□□□□□ -0.21
PNKP-203ENST00000593946 NTN5Q8WTR8 489 aaPredicted RBP13.76□□□□□ -0.21
PNKP-203ENST00000593946 HIGD2BQ4VC39 106 aa13.75□□□□□ -0.21
PNKP-203ENST00000593946 Q6ZVH6 145 aa13.75□□□□□ -0.21
PNKP-203ENST00000593946 GVQW2A0A096LPI5 108 aaPredicted RBP13.74□□□□□ -0.21
PNKP-203ENST00000593946 SMIM13P0DJ93 91 aa13.74□□□□□ -0.21
PNKP-203ENST00000593946 ZNF561-AS1K7EIQ3 104 aa13.73□□□□□ -0.21
PNKP-203ENST00000593946 DAND5Q8N907 189 aa13.73□□□□□ -0.21
PNKP-203ENST00000593946 ERG28Q9UKR5 140 aa13.73□□□□□ -0.21
PNKP-203ENST00000593946 CBY1Q9Y3M2 126 aa13.73□□□□□ -0.21
PNKP-203ENST00000593946 A0A0U1RRA0 63 aa13.72□□□□□ -0.21
PNKP-203ENST00000593946 C10orf25Q5T742 122 aa13.72□□□□□ -0.21
PNKP-203ENST00000593946 UNQ6190/PRO20217Q6UXQ8 127 aa13.72□□□□□ -0.21
PNKP-203ENST00000593946 C2orf48Q96LS8 159 aa13.71□□□□□ -0.21
PNKP-203ENST00000593946 USP17L23D6RBM5 183 aa13.7□□□□□ -0.22
PNKP-203ENST00000593946 PTTG1IPP53801 180 aa13.7□□□□□ -0.22
PNKP-203ENST00000593946 MUSTN1Q8IVN3 82 aa13.7□□□□□ -0.22
PNKP-203ENST00000593946 IFITM1P13164 125 aa13.69□□□□□ -0.22
PNKP-203ENST00000593946 LINC00158P58513 81 aa13.69□□□□□ -0.22
PNKP-203ENST00000593946 A6NDN8 102 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 F8WDY8 70 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 PFN2P35080 140 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 COX17Q14061 63 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 LINC00476Q8WZB0 136 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 CAMK2N2Q96S95 79 aa13.68□□□□□ -0.22
PNKP-203ENST00000593946 TMEM238LA0A1B0GVL6 79 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 A6NJY4 79 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 C9orf116Q5BN46 136 aaPredicted RBP13.67□□□□□ -0.22
PNKP-203ENST00000593946 Q6ZR54 194 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 MIR7-3HGQ8N6C7 128 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 LINC00308Q8TCZ7 52 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 M0R2N4 97 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 EIF4EBP3O60516 100 aaPredicted RBP13.67□□□□□ -0.22
PNKP-203ENST00000593946 NPC2P61916 151 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 RPL24P83731 157 aaKnown RBP13.67□□□□□ -0.22
PNKP-203ENST00000593946 C6orf48Q9UBA6 75 aa13.67□□□□□ -0.22
PNKP-203ENST00000593946 PSCAO43653 123 aa13.66□□□□□ -0.22
PNKP-203ENST00000593946 LY6G6CO95867 125 aa13.66□□□□□ -0.22
PNKP-203ENST00000593946 Q6ZRN7 208 aaPredicted RBP13.66□□□□□ -0.22
PNKP-203ENST00000593946 NHP2Q9NX24 153 aaKnown RBP13.66□□□□□ -0.22
PNKP-203ENST00000593946 DNAH10Q8IVF4 4471 aa13.66□□□□□ -0.22
PNKP-203ENST00000593946 TRBV30A0A0K0K1B3 111 aa13.65□□□□□ -0.22
PNKP-203ENST00000593946 SOSTDC1Q6X4U4 206 aa13.65□□□□□ -0.22
PNKP-203ENST00000593946 PPDPFQ9H3Y8 114 aa13.65□□□□□ -0.22
PNKP-203ENST00000593946 A4D1N5 150 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 LECT2O14960 151 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 Q6ZRU5 148 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 KMT2AQ03164 3969 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 A0A1B0GWB2 263 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 COPS9Q8WXC6 57 aa13.64□□□□□ -0.23
PNKP-203ENST00000593946 WFDC2Q14508 124 aa13.63□□□□□ -0.23
PNKP-203ENST00000593946 SYCNQ0VAF6 134 aa13.61□□□□□ -0.23
PNKP-203ENST00000593946 K7ERJ3 54 aa13.61□□□□□ -0.23
PNKP-203ENST00000593946 SLPIP03973 132 aa13.6□□□□□ -0.23
PNKP-203ENST00000593946 CFC1BP0CG36 223 aa13.6□□□□□ -0.23
PNKP-203ENST00000593946 CFC1P0CG37 223 aa13.6□□□□□ -0.23
PNKP-203ENST00000593946 UBE2V1Q13404 147 aa13.6□□□□□ -0.23
PNKP-203ENST00000593946 ALMS1Q8TCU4 4167 aa13.6□□□□□ -0.23
PNKP-203ENST00000593946 TAX1BP3O14907 124 aa13.59□□□□□ -0.23
PNKP-203ENST00000593946 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.59□□□□□ -0.23
PNKP-203ENST00000593946 CARD19Q96LW7 228 aa13.59□□□□□ -0.23
PNKP-203ENST00000593946 DNAH6Q9C0G6 4158 aa13.57□□□□□ -0.24
PNKP-203ENST00000593946 LOC107984156A0A0G2JMH3 177 aa13.57□□□□□ -0.24
PNKP-203ENST00000593946 LRCOL1A6NCL2 159 aa13.57□□□□□ -0.24
PNKP-203ENST00000593946 ARL17AQ8IVW1 177 aa13.57□□□□□ -0.24
PNKP-203ENST00000593946 A0A0B4J2C4 111 aa13.56□□□□□ -0.24
PNKP-203ENST00000593946 RNF151Q2KHN1 245 aa13.56□□□□□ -0.24
PNKP-203ENST00000593946 C14orf177Q52M58 125 aa13.56□□□□□ -0.24
PNKP-203ENST00000593946 SND1-IT1Q9HBX3 110 aa13.56□□□□□ -0.24
PNKP-203ENST00000593946 RAB37Q96AX2 223 aa13.55□□□□□ -0.24
PNKP-203ENST00000593946 NDUFC2-KCTD14E9PQ53 114 aa13.53□□□□□ -0.24
PNKP-203ENST00000593946 CNBPP62633 177 aaKnown RBP13.52□□□□□ -0.25
PNKP-203ENST00000593946 C1orf134Q5TEV5 83 aa13.52□□□□□ -0.25
PNKP-203ENST00000593946 PRO1854Q9UHT4 67 aa13.52□□□□□ -0.25
PNKP-203ENST00000593946 TLX1NBP0CAT3 122 aa13.5□□□□□ -0.25
PNKP-203ENST00000593946 C9orf118A6NHY6 69 aa13.5□□□□□ -0.25
PNKP-203ENST00000593946 VAMP3Q15836 100 aa13.49□□□□□ -0.25
PNKP-203ENST00000593946 Q6ZRP5 223 aa13.49□□□□□ -0.25
PNKP-203ENST00000593946 IGKV2-28A0A075B6P5 120 aa13.48□□□□□ -0.25
PNKP-203ENST00000593946 IGKV2D-28P01615 120 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms