RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-217ENST00000555116 SMAGPQ0VAQ4 97 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 FAM104AQ969W3 186 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 CDK2AP2O75956 126 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 C14orf177Q52M58 125 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 DGAT2L7PQ6IED9 249 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 CHCHD10Q8WYQ3 142 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-217ENST00000555116 CHAC1Q9BUX1 264 aa9.3□□□□□ -0.92
SHMT2-217ENST00000555116 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
SHMT2-217ENST00000555116 GAGE12HA6NDE8 117 aa9.29□□□□□ -0.92
SHMT2-217ENST00000555116 VCX2Q9H322 139 aa9.29□□□□□ -0.92
SHMT2-217ENST00000555116 MYMXA0A1B0GTQ4 84 aa9.28□□□□□ -0.92
SHMT2-217ENST00000555116 K7EP34 96 aa9.28□□□□□ -0.92
SHMT2-217ENST00000555116 Q6ZUT4 128 aa9.28□□□□□ -0.92
SHMT2-217ENST00000555116 HERVK_113P61574 105 aa9.28□□□□□ -0.92
SHMT2-217ENST00000555116 AMELXQ99217 191 aa9.28□□□□□ -0.92
SHMT2-217ENST00000555116 HERC2O95714 4834 aa9.27□□□□□ -0.93
SHMT2-217ENST00000555116 H3BUT2 72 aa9.27□□□□□ -0.93
SHMT2-217ENST00000555116 SMIM13P0DJ93 91 aa9.27□□□□□ -0.93
SHMT2-217ENST00000555116 RNASE13Q5GAN3 156 aaKnown RBP9.27□□□□□ -0.93
SHMT2-217ENST00000555116 TMEM170BQ5T4T1 132 aa9.27□□□□□ -0.93
SHMT2-217ENST00000555116 SPANXA1Q9NS26 97 aa9.27□□□□□ -0.93
SHMT2-217ENST00000555116 APOBP04114 4563 aaKnown RBP9.26□□□□□ -0.93
SHMT2-217ENST00000555116 FOXI1Q12951 378 aa9.26□□□□□ -0.93
SHMT2-217ENST00000555116 RYR1P21817 5038 aa9.26□□□□□ -0.93
SHMT2-217ENST00000555116 MRPS36P82909 103 aaKnown RBP9.25□□□□□ -0.93
SHMT2-217ENST00000555116 SS18Q15532 418 aa9.25□□□□□ -0.93
SHMT2-217ENST00000555116 A0A0J9YXV3 536 aa9.25□□□□□ -0.93
SHMT2-217ENST00000555116 FABP2P12104 132 aa9.25□□□□□ -0.93
SHMT2-217ENST00000555116 XCL1P47992 114 aa9.25□□□□□ -0.93
SHMT2-217ENST00000555116 C15orf56Q8N910 161 aa9.25□□□□□ -0.93
SHMT2-217ENST00000555116 A0A1W2PPM0 123 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 ZNF815PA8K554 130 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 ZNF22P17026 224 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-217ENST00000555116 TAL2Q16559 108 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 LINC01620Q4KN68 170 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 CEND1Q8N111 149 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 HSPG2P98160 4391 aa9.24□□□□□ -0.93
SHMT2-217ENST00000555116 TMEM223A0PJW6 202 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 FXYD2P54710 66 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 SPCS1Q9Y6A9 102 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 XGP55808 180 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 TSPEAR-AS2P59090 65 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 CD164L2Q6UWJ8 174 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 KRTAP17-1Q9BYP8 105 aa9.23□□□□□ -0.93
SHMT2-217ENST00000555116 TRAV13-1A0A0B4J241 112 aa9.22□□□□□ -0.93
SHMT2-217ENST00000555116 CFAP161Q6P656 301 aa9.22□□□□□ -0.93
SHMT2-217ENST00000555116 RAB37Q96AX2 223 aa9.22□□□□□ -0.93
SHMT2-217ENST00000555116 HIST1H4GQ99525 98 aa9.22□□□□□ -0.93
SHMT2-217ENST00000555116 FAM30AQ9NZY2 134 aa9.22□□□□□ -0.93
SHMT2-217ENST00000555116 J3QQQ9 107 aa9.21□□□□□ -0.94
SHMT2-217ENST00000555116 LEPROTO15243 131 aa9.21□□□□□ -0.94
SHMT2-217ENST00000555116 SLPIP03973 132 aa9.21□□□□□ -0.94
SHMT2-217ENST00000555116 PLEKHB2Q96CS7 222 aa9.21□□□□□ -0.94
SHMT2-217ENST00000555116 DNAH8Q96JB1 4490 aa9.2□□□□□ -0.94
SHMT2-217ENST00000555116 CNBPP62633 177 aaKnown RBP9.2□□□□□ -0.94
SHMT2-217ENST00000555116 SCGB1D4Q6XE38 83 aa9.2□□□□□ -0.94
SHMT2-217ENST00000555116 Q6ZSA8 131 aa9.2□□□□□ -0.94
SHMT2-217ENST00000555116 GVQW2A0A096LPI5 108 aaPredicted RBP9.19□□□□□ -0.94
SHMT2-217ENST00000555116 TINCRA0A1B0GVN0 87 aa9.19□□□□□ -0.94
SHMT2-217ENST00000555116 HIGD2BQ4VC39 106 aa9.19□□□□□ -0.94
SHMT2-217ENST00000555116 C9orf163Q8N9P6 203 aa9.19□□□□□ -0.94
SHMT2-217ENST00000555116 IGHV1-58A0A0C4DH39 117 aa9.19□□□□□ -0.94
SHMT2-217ENST00000555116 LGALS3P17931 250 aaKnown RBP9.19□□□□□ -0.94
SHMT2-217ENST00000555116 UBE2D1P51668 147 aa9.18□□□□□ -0.94
SHMT2-217ENST00000555116 COX7A2LO14548 114 aa9.17□□□□□ -0.94
SHMT2-217ENST00000555116 HAMPP81172 84 aa9.17□□□□□ -0.94
SHMT2-217ENST00000555116 NHP2Q9NX24 153 aaKnown RBP9.17□□□□□ -0.94
SHMT2-217ENST00000555116 IGHV3-64A0A075B6Q5 118 aa9.17□□□□□ -0.94
SHMT2-217ENST00000555116 K7ERJ3 54 aa9.17□□□□□ -0.94
SHMT2-217ENST00000555116 NAA38Q9BRA0 125 aaKnown RBP9.17□□□□□ -0.94
SHMT2-217ENST00000555116 IGHV3OR16-9A0A0B4J2B5 98 aa9.16□□□□□ -0.94
SHMT2-217ENST00000555116 C5orf38Q86SI9 138 aa9.16□□□□□ -0.94
SHMT2-217ENST00000555116 J3QR89 54 aa9.15□□□□□ -0.94
SHMT2-217ENST00000555116 SRSF9Q13242 221 aaKnown RBP eCLIP9.15□□□□□ -0.94
SHMT2-217ENST00000555116 GEMIN7Q9H840 131 aaKnown RBP9.15□□□□□ -0.94
SHMT2-217ENST00000555116 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.15□□□□□ -0.95
SHMT2-217ENST00000555116 F8W1H4 67 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 MALP21145 153 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 LINC00242Q5T6M2 205 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 SDIM1Q6ZPB5 146 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 Q8N1X5 172 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 LINC00526Q96FQ7 95 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 KRTAP4-5Q9BYR2 181 aa9.15□□□□□ -0.95
SHMT2-217ENST00000555116 SPANXB1Q9NS25 103 aaPredicted RBP9.15□□□□□ -0.95
SHMT2-217ENST00000555116 IGLV5-45A0A087WSX0 123 aa9.14□□□□□ -0.95
SHMT2-217ENST00000555116 A0A1B0GWB2 263 aa9.14□□□□□ -0.95
SHMT2-217ENST00000555116 COX6A2Q02221 97 aa9.13□□□□□ -0.95
SHMT2-217ENST00000555116 FAM19A3Q7Z5A8 133 aa9.13□□□□□ -0.95
SHMT2-217ENST00000555116 SPINK8P0C7L1 97 aa9.13□□□□□ -0.95
SHMT2-217ENST00000555116 RPL24P83731 157 aaKnown RBP9.13□□□□□ -0.95
SHMT2-217ENST00000555116 CDKN2A-AS1Q9UH64 79 aa9.13□□□□□ -0.95
SHMT2-217ENST00000555116 SCXQ7RTU7 201 aa9.12□□□□□ -0.95
SHMT2-217ENST00000555116 ZNF561-AS1K7EIQ3 104 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 APOMO95445 188 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 HERVK_113P63121 156 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 TMEM238LA0A1B0GVL6 79 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 A6NJY4 79 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 C4orf48Q5BLP8 95 aa9.11□□□□□ -0.95
SHMT2-217ENST00000555116 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms