RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MUSTN1Q8IVN3 82 aa1.17□□□□□ -2.22
SCFD1-208ENST00000553278 ANKRD17O75179 2603 aaKnown RBP1.17□□□□□ -2.22
SCFD1-208ENST00000553278 SHPRHQ149N8 1683 aa1.16□□□□□ -2.22
SCFD1-208ENST00000553278 Q8IZM0 81 aa1.16□□□□□ -2.22
SCFD1-208ENST00000553278 FRAS1Q86XX4 4008 aa1.16□□□□□ -2.22
SCFD1-208ENST00000553278 SPTBN2O15020 2390 aa1.15□□□□□ -2.22
SCFD1-208ENST00000553278 A0A0G2JMZ2 1700 aa1.15□□□□□ -2.22
SCFD1-208ENST00000553278 C6orf201Q7Z4U5 140 aa1.15□□□□□ -2.23
SCFD1-208ENST00000553278 RABAC1Q9UI14 185 aa1.15□□□□□ -2.23
SCFD1-208ENST00000553278 PIEZO1Q92508 2521 aa1.15□□□□□ -2.23
SCFD1-208ENST00000553278 CACNA1EQ15878 2313 aa1.15□□□□□ -2.23
SCFD1-208ENST00000553278 PAPPAQ13219 1627 aa1.15□□□□□ -2.23
SCFD1-208ENST00000553278 A0A1B0GU69 56 aa1.14□□□□□ -2.23
SCFD1-208ENST00000553278 HMGN2P05204 90 aaKnown RBP1.14□□□□□ -2.23
SCFD1-208ENST00000553278 CUX1P39880 1505 aa1.14□□□□□ -2.23
SCFD1-208ENST00000553278 TULP4Q9NRJ4 1543 aa1.14□□□□□ -2.23
SCFD1-208ENST00000553278 C2CD3Q4AC94 2353 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 LINC00959A0A1B0GUT2 108 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 PRH1P02810 166 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 TARBP1Q13395 1621 aaKnown RBP1.13□□□□□ -2.23
SCFD1-208ENST00000553278 SCRIBQ14160 1630 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 BIVM-ERCC5R4GMW8 1640 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 UACAQ9BZF9 1416 aa1.13□□□□□ -2.23
SCFD1-208ENST00000553278 PPLO60437 1756 aa1.12□□□□□ -2.23
SCFD1-208ENST00000553278 TPRP12270 2363 aaKnown RBP1.12□□□□□ -2.23
SCFD1-208ENST00000553278 PAPPA2Q9BXP8 1791 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 CHD9Q3L8U1 2897 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 FXYD6-FXYD2A0A087WZ82 144 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 SETBP1Q9Y6X0 1596 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 MED14O60244 1454 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 CCDC18Q5T9S5 1454 aa1.11□□□□□ -2.23
SCFD1-208ENST00000553278 C5P01031 1676 aa1.1□□□□□ -2.23
SCFD1-208ENST00000553278 CELSR2Q9HCU4 2923 aa1.09□□□□□ -2.23
SCFD1-208ENST00000553278 UBR1Q8IWV7 1749 aa1.09□□□□□ -2.23
SCFD1-208ENST00000553278 ZNF292O60281 2723 aa1.09□□□□□ -2.23
SCFD1-208ENST00000553278 SNRPFP62306 86 aaKnown RBP1.09□□□□□ -2.23
SCFD1-208ENST00000553278 SMR3AQ99954 134 aa1.09□□□□□ -2.23
SCFD1-208ENST00000553278 CRYBG1Q9Y4K1 1723 aa1.09□□□□□ -2.24
SCFD1-208ENST00000553278 KRTAP2-3P0C7H8 128 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 DEFB123Q8N688 67 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 KRTAP2-4Q9BYR9 128 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 KRTAP2-1Q9BYU5 128 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 TNCP24821 2201 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 DOPEY2Q9Y3R5 2298 aa1.08□□□□□ -2.24
SCFD1-208ENST00000553278 NMSQ5H8A3 153 aa1.06□□□□□ -2.24
SCFD1-208ENST00000553278 UBE2D4Q9Y2X8 147 aa1.06□□□□□ -2.24
SCFD1-208ENST00000553278 ANKRD36A6QL64 1941 aa1.06□□□□□ -2.24
SCFD1-208ENST00000553278 KIF14Q15058 1648 aa1.06□□□□□ -2.24
SCFD1-208ENST00000553278 NEXMIFQ5QGS0 1516 aa1.05□□□□□ -2.24
SCFD1-208ENST00000553278 NHSL1Q5SYE7 1610 aa1.05□□□□□ -2.24
SCFD1-208ENST00000553278 TDRG1Q3Y452 100 aa1.05□□□□□ -2.24
SCFD1-208ENST00000553278 Q5BKY6 102 aa1.05□□□□□ -2.24
SCFD1-208ENST00000553278 PIEZO2Q9H5I5 2752 aa1.05□□□□□ -2.24
SCFD1-208ENST00000553278 MAP3K4Q9Y6R4 1608 aa1.04□□□□□ -2.24
SCFD1-208ENST00000553278 USF3Q68DE3 2245 aa1.04□□□□□ -2.24
SCFD1-208ENST00000553278 SAMD9Q5K651 1589 aa1.04□□□□□ -2.24
SCFD1-208ENST00000553278 IQCF6A8MYZ5 107 aa1.03□□□□□ -2.24
SCFD1-208ENST00000553278 PLGLAQ15195 96 aa1.03□□□□□ -2.24
SCFD1-208ENST00000553278 LINC00643Q86TS7 51 aa1.03□□□□□ -2.24
SCFD1-208ENST00000553278 USMG5Q96IX5 58 aa1.03□□□□□ -2.24
SCFD1-208ENST00000553278 CCDC141Q6ZP82 1450 aa1.03□□□□□ -2.24
SCFD1-208ENST00000553278 ACYP1P07311 99 aa1.02□□□□□ -2.25
SCFD1-208ENST00000553278 IGLC3P0DOY3 106 aa1.02□□□□□ -2.25
SCFD1-208ENST00000553278 WFDC2Q14508 124 aa1.02□□□□□ -2.25
SCFD1-208ENST00000553278 SUPT6HQ7KZ85 1726 aaKnown RBP1.02□□□□□ -2.25
SCFD1-208ENST00000553278 S100A13Q99584 98 aa1.02□□□□□ -2.25
SCFD1-208ENST00000553278 MYMXA0A1B0GTQ4 84 aa1.01□□□□□ -2.25
SCFD1-208ENST00000553278 KANTRA0A1W2PQU2 76 aa1.01□□□□□ -2.25
SCFD1-208ENST00000553278 CFDP00746 253 aaPredicted RBP1.01□□□□□ -2.25
SCFD1-208ENST00000553278 IGLC2P0DOY2 106 aa1.01□□□□□ -2.25
SCFD1-208ENST00000553278 COX6B1P14854 86 aa1.01□□□□□ -2.25
SCFD1-208ENST00000553278 ANK2Q01484 3957 aa1□□□□□ -2.25
SCFD1-208ENST00000553278 SPINK1P00995 79 aa1□□□□□ -2.25
SCFD1-208ENST00000553278 MAGI2Q86UL8 1455 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 LRRC37AA6NMS7 1700 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 PKD1L3Q7Z443 1732 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 K7EQZ3 153 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 ALKQ9UM73 1620 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 USP24Q9UPU5 2620 aa0.99□□□□□ -2.25
SCFD1-208ENST00000553278 URB1O60287 2271 aaKnown RBP0.98□□□□□ -2.25
SCFD1-208ENST00000553278 KIAA0556O60303 1618 aa0.98□□□□□ -2.25
SCFD1-208ENST00000553278 Q5VSD8 79 aa0.98□□□□□ -2.25
SCFD1-208ENST00000553278 KIF20BQ96Q89 1820 aa0.98□□□□□ -2.25
SCFD1-208ENST00000553278 ZFYVE26Q68DK2 2539 aa0.97□□□□□ -2.25
SCFD1-208ENST00000553278 A0A1B0GUT8 65 aa0.97□□□□□ -2.25
SCFD1-208ENST00000553278 ARHGAP35Q9NRY4 1499 aa0.97□□□□□ -2.25
SCFD1-208ENST00000553278 PTPRZ1P23471 2315 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-208ENST00000553278 IGF2RP11717 2491 aa0.96□□□□□ -2.26
SCFD1-208ENST00000553278 COX8AP10176 69 aa0.96□□□□□ -2.26
SCFD1-208ENST00000553278 ADIRFQ15847 76 aa0.96□□□□□ -2.26
SCFD1-208ENST00000553278 ST20Q9HBF5 79 aa0.96□□□□□ -2.26
SCFD1-208ENST00000553278 SLIT1O75093 1534 aa0.95□□□□□ -2.26
SCFD1-208ENST00000553278 ATP7BP35670 1465 aa0.95□□□□□ -2.26
SCFD1-208ENST00000553278 DEFB112Q30KQ8 113 aa0.95□□□□□ -2.26
SCFD1-208ENST00000553278 CRIPTQ9P021 101 aa0.95□□□□□ -2.26
SCFD1-208ENST00000553278 NAV2Q8IVL1 2488 aa0.95□□□□□ -2.26
SCFD1-208ENST00000553278 CEBPZOSA8MTT3 80 aa0.94□□□□□ -2.26
SCFD1-208ENST00000553278 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
SCFD1-208ENST00000553278 SPTBN1Q01082 2364 aaKnown RBP0.93□□□□□ -2.26
SCFD1-208ENST00000553278 LRRC9Q6ZRR7 1453 aa0.93□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms