RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 GCN1Q92616 2671 aaKnown RBP10.7□□□□□ -0.7
CUX1-214ENST00000550008 Q8N2B8 174 aa10.69□□□□□ -0.7
CUX1-214ENST00000550008 AMELXQ99217 191 aa10.69□□□□□ -0.7
CUX1-214ENST00000550008 IGKV2-24A0A0C4DH68 120 aa10.69□□□□□ -0.7
CUX1-214ENST00000550008 IBA57-AS1B1ANH7 110 aa10.69□□□□□ -0.7
CUX1-214ENST00000550008 C9orf116Q5BN46 136 aaPredicted RBP10.69□□□□□ -0.7
CUX1-214ENST00000550008 ASPMQ8IZT6 3477 aa10.68□□□□□ -0.7
CUX1-214ENST00000550008 H7C423 109 aa10.68□□□□□ -0.7
CUX1-214ENST00000550008 TRBV30A0A0K0K1B3 111 aa10.68□□□□□ -0.7
CUX1-214ENST00000550008 NANOS2P60321 138 aaKnown RBP10.67□□□□□ -0.7
CUX1-214ENST00000550008 ETDCA0A1B0GVM5 59 aa10.67□□□□□ -0.7
CUX1-214ENST00000550008 UNC79Q9P2D8 2635 aa10.67□□□□□ -0.7
CUX1-214ENST00000550008 DCHS1Q96JQ0 3298 aa10.67□□□□□ -0.7
CUX1-214ENST00000550008 C6orf99Q4VX62 202 aa10.66□□□□□ -0.7
CUX1-214ENST00000550008 C16orf95Q9H693 158 aa10.66□□□□□ -0.7
CUX1-214ENST00000550008 NOTCH1P46531 2555 aa10.66□□□□□ -0.7
CUX1-214ENST00000550008 PRR3P79522 188 aaKnown RBP10.66□□□□□ -0.7
CUX1-214ENST00000550008 CD164L2Q6UWJ8 174 aa10.65□□□□□ -0.7
CUX1-214ENST00000550008 SHISA2Q6UWI4 295 aa10.65□□□□□ -0.7
CUX1-214ENST00000550008 KIR2DL5BQ8NHK3 375 aa10.65□□□□□ -0.7
CUX1-214ENST00000550008 STAB1Q9NY15 2570 aa10.65□□□□□ -0.7
CUX1-214ENST00000550008 UQCRQO14949 82 aa10.65□□□□□ -0.71
CUX1-214ENST00000550008 NBEAL2Q6ZNJ1 2754 aa10.65□□□□□ -0.71
CUX1-214ENST00000550008 FSHBP01225 129 aa10.64□□□□□ -0.71
CUX1-214ENST00000550008 NTM-AS1Q6ZSK4 140 aa10.64□□□□□ -0.71
CUX1-214ENST00000550008 DIRC1Q969H9 104 aa10.64□□□□□ -0.71
CUX1-214ENST00000550008 A0A0J9YWU9 116 aa10.64□□□□□ -0.71
CUX1-214ENST00000550008 LINC00643Q86TS7 51 aa10.64□□□□□ -0.71
CUX1-214ENST00000550008 UNQ6190/PRO20217Q6UXQ8 127 aa10.63□□□□□ -0.71
CUX1-214ENST00000550008 A0A096LNT2 108 aa10.63□□□□□ -0.71
CUX1-214ENST00000550008 M0QXV9 152 aa10.63□□□□□ -0.71
CUX1-214ENST00000550008 KLK9Q2XQG4 91 aa10.62□□□□□ -0.71
CUX1-214ENST00000550008 SMIM11BQ8TCY0 68 aa10.62□□□□□ -0.71
CUX1-214ENST00000550008 TIMM17BO60830 172 aa10.62□□□□□ -0.71
CUX1-214ENST00000550008 TMEM258P61165 79 aa10.62□□□□□ -0.71
CUX1-214ENST00000550008 Q6ZTC4 211 aa10.62□□□□□ -0.71
CUX1-214ENST00000550008 FHL3Q13643 280 aa10.61□□□□□ -0.71
CUX1-214ENST00000550008 LELP1Q5T871 98 aa10.61□□□□□ -0.71
CUX1-214ENST00000550008 COL6A5A8TX70 2615 aa10.61□□□□□ -0.71
CUX1-214ENST00000550008 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.6□□□□□ -0.71
CUX1-214ENST00000550008 LST1O00453 97 aa10.6□□□□□ -0.71
CUX1-214ENST00000550008 ZANQ9Y493 2812 aa10.6□□□□□ -0.71
CUX1-214ENST00000550008 LINC01546A6NGU7 62 aa10.6□□□□□ -0.71
CUX1-214ENST00000550008 SETXQ7Z333 2677 aaKnown RBP10.6□□□□□ -0.71
CUX1-214ENST00000550008 hADV29S1A0JD25 119 aa10.59□□□□□ -0.71
CUX1-214ENST00000550008 CYSRT1A8MQ03 144 aa10.59□□□□□ -0.71
CUX1-214ENST00000550008 C3orf22Q8N5N4 141 aa10.59□□□□□ -0.71
CUX1-214ENST00000550008 IGKV2-28A0A075B6P5 120 aa10.58□□□□□ -0.72
CUX1-214ENST00000550008 IGKV2D-28P01615 120 aa10.58□□□□□ -0.72
CUX1-214ENST00000550008 CELA1Q9UNI1 258 aa10.58□□□□□ -0.72
CUX1-214ENST00000550008 A0A087WZ39 114 aa10.57□□□□□ -0.72
CUX1-214ENST00000550008 COX7BP24311 80 aa10.57□□□□□ -0.72
CUX1-214ENST00000550008 DMDP11532 3685 aa10.57□□□□□ -0.72
CUX1-214ENST00000550008 PKIGQ9Y2B9 76 aa10.57□□□□□ -0.72
CUX1-214ENST00000550008 C6orf223Q8N319 242 aa10.56□□□□□ -0.72
CUX1-214ENST00000550008 BRK1Q8WUW1 75 aa10.56□□□□□ -0.72
CUX1-214ENST00000550008 TMEM256-PLSCR3K7ERE1 68 aa10.56□□□□□ -0.72
CUX1-214ENST00000550008 LAMA5O15230 3695 aa10.56□□□□□ -0.72
CUX1-214ENST00000550008 SDIM1Q6ZPB5 146 aa10.56□□□□□ -0.72
CUX1-214ENST00000550008 ASH1LQ9NR48 2969 aaKnown RBP10.55□□□□□ -0.72
CUX1-214ENST00000550008 SYCNQ0VAF6 134 aa10.55□□□□□ -0.72
CUX1-214ENST00000550008 CSDC2Q9Y534 153 aaKnown RBP10.55□□□□□ -0.72
CUX1-214ENST00000550008 NBEAL1Q6ZS30 2694 aa10.55□□□□□ -0.72
CUX1-214ENST00000550008 JMJD7-PLA2G4BH0Y9G9 81 aa10.55□□□□□ -0.72
CUX1-214ENST00000550008 Q8N3U1 123 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 HIGD2AQ9BW72 106 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 ITPR2Q14571 2701 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 Q6ZQY7 126 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 Q8IZM0 81 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 A0A096LNI7 61 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 NDUFC2O95298 119 aa10.54□□□□□ -0.72
CUX1-214ENST00000550008 FAM19A5Q7Z5A7 132 aaPredicted RBP10.53□□□□□ -0.72
CUX1-214ENST00000550008 C20orf197Q8N268 126 aa10.53□□□□□ -0.72
CUX1-214ENST00000550008 RELNP78509 3460 aa10.53□□□□□ -0.72
CUX1-214ENST00000550008 WFDC10BQ8IUB3 73 aa10.53□□□□□ -0.72
CUX1-214ENST00000550008 SCXQ7RTU7 201 aa10.52□□□□□ -0.72
CUX1-214ENST00000550008 TRAV23DV6A0A075B6W5 121 aa10.51□□□□□ -0.73
CUX1-214ENST00000550008 TRAV10A0A0B4J240 114 aa10.51□□□□□ -0.73
CUX1-214ENST00000550008 A0A0U1RQV1 116 aa10.5□□□□□ -0.73
CUX1-214ENST00000550008 A8MTW9 85 aa10.5□□□□□ -0.73
CUX1-214ENST00000550008 FUSP35637 526 aaKnown RBP eCLIP10.5□□□□□ -0.731e-7■■■■□ 22.5
CUX1-214ENST00000550008 UTP20O75691 2785 aaKnown RBP10.5□□□□□ -0.73
CUX1-214ENST00000550008 RPL37AP8A6NKH3 93 aa10.49□□□□□ -0.73
CUX1-214ENST00000550008 M0R2N4 97 aa10.49□□□□□ -0.73
CUX1-214ENST00000550008 NREPQ16612 68 aa10.49□□□□□ -0.73
CUX1-214ENST00000550008 ZNF575Q86XF7 245 aa10.49□□□□□ -0.73
CUX1-214ENST00000550008 IGHV3OR16-9A0A0B4J2B5 98 aa10.48□□□□□ -0.73
CUX1-214ENST00000550008 LINC00337Q8N6G1 96 aa10.48□□□□□ -0.73
CUX1-214ENST00000550008 X6R8D5 127 aa10.48□□□□□ -0.73
CUX1-214ENST00000550008 A0A087WYN8 130 aa10.48□□□□□ -0.73
CUX1-214ENST00000550008 CDK2AP2O75956 126 aa10.47□□□□□ -0.73
CUX1-214ENST00000550008 CRYBG3Q68DQ2 2970 aa10.47□□□□□ -0.73
CUX1-214ENST00000550008 Q6Q795 121 aa10.46□□□□□ -0.73
CUX1-214ENST00000550008 UBE2AP49459 152 aa10.46□□□□□ -0.74
CUX1-214ENST00000550008 CDIP1Q9H305 208 aa10.46□□□□□ -0.74
CUX1-214ENST00000550008 IGLV5-39A0A0G2JS06 123 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 IMUPQ9GZP8 106 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 COX7CP15954 63 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 LYPD5Q6UWN5 251 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 SOSTDC1Q6X4U4 206 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms