RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 IGKV2-28A0A075B6P5 120 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 IGKV2D-28P01615 120 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 XGP55808 180 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 CKS1BP61024 79 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 COX17Q14061 63 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 LELP1Q5T871 98 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 LINC00269Q8N2A0 174 aa10.23□□□□□ -0.77
NUP54-217ENST00000514987 FAM240AA0A1B0GVK7 77 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 H0YGX0 51 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 ANGP03950 147 aaKnown RBP10.22□□□□□ -0.77
NUP54-217ENST00000514987 PFN2P35080 140 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 REG3AQ06141 175 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 CFAP161Q6P656 301 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 LINC00337Q8N6G1 96 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 CHCHD10Q8WYQ3 142 aaPredicted RBP10.22□□□□□ -0.77
NUP54-217ENST00000514987 GCN1Q92616 2671 aaKnown RBP10.22□□□□□ -0.77
NUP54-217ENST00000514987 CELA1Q9UNI1 258 aa10.22□□□□□ -0.77
NUP54-217ENST00000514987 FN1P02751 2386 aaKnown RBP10.21□□□□□ -0.78
NUP54-217ENST00000514987 MT-ATP8P03928 68 aa10.21□□□□□ -0.78
NUP54-217ENST00000514987 MALP21145 153 aa10.2□□□□□ -0.78
NUP54-217ENST00000514987 CLPSL2Q6UWE3 100 aa10.2□□□□□ -0.78
NUP54-217ENST00000514987 MUC7Q8TAX7 377 aa10.2□□□□□ -0.78
NUP54-217ENST00000514987 NSD1Q96L73 2696 aaPredicted RBP10.19□□□□□ -0.78
NUP54-217ENST00000514987 HECTD1Q9ULT8 2610 aa10.19□□□□□ -0.78
NUP54-217ENST00000514987 ACYP1P07311 99 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 BAALC-AS2P0C853 105 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 KIAA0087Q14695 138 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 OTOGQ6ZRI0 2925 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 SMIM11BQ8TCY0 68 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 H3BNG1 76 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 NDUFC2O95298 119 aa10.18□□□□□ -0.78
NUP54-217ENST00000514987 C11orf68Q9H3H3 251 aaKnown RBP10.18□□□□□ -0.78
NUP54-217ENST00000514987 KLK5Q9Y337 293 aaPredicted RBP10.18□□□□□ -0.78
NUP54-217ENST00000514987 A0A1B0GV72 72 aa10.17□□□□□ -0.78
NUP54-217ENST00000514987 SNCGO76070 127 aa10.17□□□□□ -0.78
NUP54-217ENST00000514987 HTN3P15516 51 aa10.17□□□□□ -0.78
NUP54-217ENST00000514987 NOTCH2Q04721 2471 aa10.17□□□□□ -0.78
NUP54-217ENST00000514987 DNAL4O96015 105 aa10.15□□□□□ -0.78
NUP54-217ENST00000514987 OR13C6PQ8NH95 151 aa10.15□□□□□ -0.78
NUP54-217ENST00000514987 FAM218AQ96MZ4 157 aa10.15□□□□□ -0.78
NUP54-217ENST00000514987 PRR34Q9NV39 138 aa10.15□□□□□ -0.78
NUP54-217ENST00000514987 INAFM2P0DMQ5 153 aa10.14□□□□□ -0.79
NUP54-217ENST00000514987 Q6Q795 121 aa10.14□□□□□ -0.79
NUP54-217ENST00000514987 IGLV10-54A0A075B6I4 117 aa10.13□□□□□ -0.79
NUP54-217ENST00000514987 LYPD5Q6UWN5 251 aa10.12□□□□□ -0.79
NUP54-217ENST00000514987 A0A1B0GX51 115 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 EGFEM1PQ0D2K5 195 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 GAGE2BQ13066 116 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 GAGE2EQ4V326 116 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 C15orf53Q8NAA6 179 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 GAGE2DQ9UEU5 116 aa10.11□□□□□ -0.79
NUP54-217ENST00000514987 SPAG11BQ08648 103 aa10.1□□□□□ -0.79
NUP54-217ENST00000514987 Q8N3U1 123 aa10.1□□□□□ -0.79
NUP54-217ENST00000514987 TMEM126AQ9H061 195 aa10.1□□□□□ -0.79
NUP54-217ENST00000514987 KLK12Q9UKR0 248 aa10.09□□□□□ -0.79
NUP54-217ENST00000514987 A0A0J9YWU9 116 aa10.09□□□□□ -0.79
NUP54-217ENST00000514987 HIVEP1P15822 2718 aa10.08□□□□□ -0.8
NUP54-217ENST00000514987 A0A087WYN8 130 aa10.08□□□□□ -0.8
NUP54-217ENST00000514987 GVQW2A0A096LPI5 108 aaPredicted RBP10.08□□□□□ -0.8
NUP54-217ENST00000514987 OXLD1Q5BKU9 147 aa10.08□□□□□ -0.8
NUP54-217ENST00000514987 Q9HAA7 133 aa10.08□□□□□ -0.8
NUP54-217ENST00000514987 TEP1Q99973 2627 aaKnown RBP10.08□□□□□ -0.8
NUP54-217ENST00000514987 VWFP04275 2813 aa10.07□□□□□ -0.8
NUP54-217ENST00000514987 KRTAP10-11P60412 298 aa10.07□□□□□ -0.8
NUP54-217ENST00000514987 ENHOQ6UWT2 76 aa10.07□□□□□ -0.8
NUP54-217ENST00000514987 C22orf24Q9Y442 160 aa10.07□□□□□ -0.8
NUP54-217ENST00000514987 KPRPQ5T749 579 aaPredicted RBP10.06□□□□□ -0.8
NUP54-217ENST00000514987 C3orf56Q8N813 242 aa10.06□□□□□ -0.8
NUP54-217ENST00000514987 LECT2O14960 151 aa10.05□□□□□ -0.8
NUP54-217ENST00000514987 KRTAP24-1Q3LI83 254 aa10.05□□□□□ -0.8
NUP54-217ENST00000514987 ORMDL1Q9P0S3 153 aa10.05□□□□□ -0.8
NUP54-217ENST00000514987 TENM1Q9UKZ4 2725 aa10.04□□□□□ -0.8
NUP54-217ENST00000514987 CYSRT1A8MQ03 144 aa10.04□□□□□ -0.8
NUP54-217ENST00000514987 UNQ6190/PRO20217Q6UXQ8 127 aa10.04□□□□□ -0.8
NUP54-217ENST00000514987 LINC00167Q96N53 147 aa10.04□□□□□ -0.8
NUP54-217ENST00000514987 NBEAL2Q6ZNJ1 2754 aa10.04□□□□□ -0.8
NUP54-217ENST00000514987 ATRQ13535 2644 aa10.03□□□□□ -0.8
NUP54-217ENST00000514987 NANOS2P60321 138 aaKnown RBP10.03□□□□□ -0.8
NUP54-217ENST00000514987 LINC00643Q86TS7 51 aa10.03□□□□□ -0.8
NUP54-217ENST00000514987 OBSCN-AS1Q96MR7 158 aa10.03□□□□□ -0.8
NUP54-217ENST00000514987 C9orf116Q5BN46 136 aaPredicted RBP10.02□□□□□ -0.81
NUP54-217ENST00000514987 TTC32Q5I0X7 151 aa10.02□□□□□ -0.81
NUP54-217ENST00000514987 IMUPQ9GZP8 106 aa10.02□□□□□ -0.81
NUP54-217ENST00000514987 RETNQ9HD89 108 aa10.02□□□□□ -0.81
NUP54-217ENST00000514987 TRBV7-7A0A0K0K1E9 115 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 S100A7L2Q5SY68 101 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 SDIM1Q6ZPB5 146 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 ANAPC13Q9BS18 74 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 PRR3P79522 188 aaKnown RBP10.01□□□□□ -0.81
NUP54-217ENST00000514987 C10orf25Q5T742 122 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 Q6ZTC4 211 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 C6orf223Q8N319 242 aa10.01□□□□□ -0.81
NUP54-217ENST00000514987 F8WDY8 70 aa10□□□□□ -0.81
NUP54-217ENST00000514987 Q8N814 137 aa10□□□□□ -0.81
NUP54-217ENST00000514987 TMEM256-PLSCR3K7ERE1 68 aa9.99□□□□□ -0.81
NUP54-217ENST00000514987 WFDC10BQ8IUB3 73 aa9.99□□□□□ -0.81
NUP54-217ENST00000514987 NCR3O14931 201 aa9.98□□□□□ -0.81
NUP54-217ENST00000514987 NDUFV3P56181 108 aaKnown RBP9.98□□□□□ -0.81
NUP54-217ENST00000514987 GAGE2AQ6NT46 116 aa9.98□□□□□ -0.81
NUP54-217ENST00000514987 JMJD7-PLA2G4BH0Y9G9 81 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms