RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 C19orf84I3L1E1 186 aa8.15□□□□□ -1.11
HDAC4-210ENST00000493582 CHD6Q8TD26 2715 aa8.15□□□□□ -1.11
HDAC4-210ENST00000493582 ITPR1Q14643 2758 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 IGHV4-30-2A0A087WSY4 118 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 NBPF19A0A087WUL8 3843 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 MSMBP08118 114 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 NOP10Q9NPE3 64 aaKnown RBP8.14□□□□□ -1.11
HDAC4-210ENST00000493582 A0A087WZ39 114 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 TLN2Q9Y4G6 2542 aa8.14□□□□□ -1.11
HDAC4-210ENST00000493582 AKAP9Q99996 3911 aa8.13□□□□□ -1.11
HDAC4-210ENST00000493582 LINC01547P58512 204 aaPredicted RBP8.13□□□□□ -1.11
HDAC4-210ENST00000493582 KLKP1Q107X0 134 aa8.13□□□□□ -1.11
HDAC4-210ENST00000493582 TMEM86BQ8N661 226 aa8.13□□□□□ -1.11
HDAC4-210ENST00000493582 NIPBLQ6KC79 2804 aaeCLIP8.13□□□□□ -1.11
HDAC4-210ENST00000493582 SMIM26A0A096LP01 95 aa8.12□□□□□ -1.11
HDAC4-210ENST00000493582 IL17DQ8TAD2 202 aa8.12□□□□□ -1.11
HDAC4-210ENST00000493582 DYNLRB2Q8TF09 96 aa8.12□□□□□ -1.11
HDAC4-210ENST00000493582 RBM3P98179 157 aaKnown RBP8.11□□□□□ -1.11
HDAC4-210ENST00000493582 Q6ZQT0 140 aa8.11□□□□□ -1.11
HDAC4-210ENST00000493582 USP9XQ93008 2570 aaPredicted RBP8.11□□□□□ -1.11
HDAC4-210ENST00000493582 PLA2G2AP14555 144 aa8.11□□□□□ -1.11
HDAC4-210ENST00000493582 C6orf99Q4VX62 202 aa8.11□□□□□ -1.11
HDAC4-210ENST00000493582 TRGV2A0A075B6R0 118 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 LAMTOR3Q9UHA4 124 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 FBN2P35556 2912 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 Q6ZVQ6 151 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 STHQ8IWL8 128 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 LINC00482Q8N8I6 264 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 TRBV7-6A0A0J9YX20 115 aa8.1□□□□□ -1.11
HDAC4-210ENST00000493582 A0A0U1RQV1 116 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 ODF3L2Q3SX64 289 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 TM2D3Q9BRN9 247 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 LINC00959A0A1B0GUT2 108 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 DEFB114Q30KQ6 69 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 CLPSL2Q6UWE3 100 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 BRK1Q8WUW1 75 aa8.09□□□□□ -1.11
HDAC4-210ENST00000493582 TRBV6-8A0A0A6YYG3 113 aa8.08□□□□□ -1.12
HDAC4-210ENST00000493582 SCXQ7RTU7 201 aa8.08□□□□□ -1.12
HDAC4-210ENST00000493582 Q8N3U1 123 aa8.08□□□□□ -1.12
HDAC4-210ENST00000493582 SPATA3Q8NHX4 192 aa8.08□□□□□ -1.12
HDAC4-210ENST00000493582 ZFYVE26Q68DK2 2539 aa8.08□□□□□ -1.12
HDAC4-210ENST00000493582 SETD2Q9BYW2 2564 aaPredicted RBP8.08□□□□□ -1.12
HDAC4-210ENST00000493582 C9orf116Q5BN46 136 aaPredicted RBP8.07□□□□□ -1.12
HDAC4-210ENST00000493582 ZNF843Q8N446 348 aa8.07□□□□□ -1.12
HDAC4-210ENST00000493582 ZNF702PQ9H963 129 aa8.07□□□□□ -1.12
HDAC4-210ENST00000493582 TRGV4A0A0C4DH28 118 aa8.07□□□□□ -1.12
HDAC4-210ENST00000493582 Q8NDZ9 215 aa8.07□□□□□ -1.12
HDAC4-210ENST00000493582 CCL19Q99731 98 aa8.07□□□□□ -1.12
HDAC4-210ENST00000493582 POLQO75417 2590 aa8.06□□□□□ -1.12
HDAC4-210ENST00000493582 BCE1O60756 84 aa8.06□□□□□ -1.12
HDAC4-210ENST00000493582 B4DSR2 109 aa8.06□□□□□ -1.12
HDAC4-210ENST00000493582 LINC00575Q6W349 94 aa8.06□□□□□ -1.12
HDAC4-210ENST00000493582 FN1P02751 2386 aaKnown RBP8.05□□□□□ -1.12
HDAC4-210ENST00000493582 MAPK1IP1LQ8NDC0 245 aa8.05□□□□□ -1.12
HDAC4-210ENST00000493582 SETXQ7Z333 2677 aaKnown RBP8.05□□□□□ -1.12
HDAC4-210ENST00000493582 PRB1P04280 392 aa8.05□□□□□ -1.12
HDAC4-210ENST00000493582 MPLKIPQ8TAP9 179 aa8.05□□□□□ -1.12
HDAC4-210ENST00000493582 CENPEQ02224 2701 aa8.05□□□□□ -1.12
HDAC4-210ENST00000493582 CACNA1AO00555 2505 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 ZNF561-AS1K7EIQ3 104 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 UTP20O75691 2785 aaKnown RBP8.04□□□□□ -1.12
HDAC4-210ENST00000493582 LOC110117498A0A087WWA1 95 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 FAM229BQ4G0N7 80 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 Q8IZM0 81 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 EPG5Q9HCE0 2579 aa8.04□□□□□ -1.12
HDAC4-210ENST00000493582 PLAC8L1A1L4L8 177 aa8.03□□□□□ -1.12
HDAC4-210ENST00000493582 MIFP14174 115 aa8.03□□□□□ -1.12
HDAC4-210ENST00000493582 TRBV7-4A0A0J9YYF1 115 aa8.02□□□□□ -1.13
HDAC4-210ENST00000493582 C6orf223Q8N319 242 aa8.02□□□□□ -1.13
HDAC4-210ENST00000493582 PTPN13Q12923 2485 aa8.02□□□□□ -1.13
HDAC4-210ENST00000493582 Q6ZQY7 126 aa8.02□□□□□ -1.13
HDAC4-210ENST00000493582 LINC00269Q8N2A0 174 aa8.02□□□□□ -1.13
HDAC4-210ENST00000493582 NBEAL2Q6ZNJ1 2754 aa8.01□□□□□ -1.13
HDAC4-210ENST00000493582 F8WDY8 70 aa8.01□□□□□ -1.13
HDAC4-210ENST00000493582 ACACBO00763 2458 aa8.01□□□□□ -1.13
HDAC4-210ENST00000493582 CXCL6P80162 114 aa8.01□□□□□ -1.13
HDAC4-210ENST00000493582 NF1P21359 2839 aa8.01□□□□□ -1.13
HDAC4-210ENST00000493582 APCP25054 2843 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 WFDC10AQ9H1F0 79 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 GIG44P09565 113 aaPredicted RBP8□□□□□ -1.13
HDAC4-210ENST00000493582 C11orf44Q8N8P7 122 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 SONP18583 2426 aaKnown RBP8□□□□□ -1.13
HDAC4-210ENST00000493582 IGLV10-54A0A075B6I4 117 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 NDUFC1O43677 76 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 NREPQ16612 68 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 TMEM254Q8TBM7 123 aa8□□□□□ -1.13
HDAC4-210ENST00000493582 FLNCQ14315 2725 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 A0A096LPF7 62 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 C1orf195Q5TG92 126 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 Q8N9L7 120 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 KIAA0087Q14695 138 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 MUC7Q8TAX7 377 aa7.99□□□□□ -1.13
HDAC4-210ENST00000493582 TEX15Q9BXT5 2789 aa7.98□□□□□ -1.13
HDAC4-210ENST00000493582 CFAP46Q8IYW2 2715 aa7.98□□□□□ -1.13
HDAC4-210ENST00000493582 C4orf3Q8WVX3 66 aa7.98□□□□□ -1.13
HDAC4-210ENST00000493582 BPY2O14599 106 aa7.98□□□□□ -1.13
HDAC4-210ENST00000493582 C16orf74Q96GX8 76 aa7.98□□□□□ -1.13
HDAC4-210ENST00000493582 A0A1W2PRX2 142 aa7.97□□□□□ -1.13
HDAC4-210ENST00000493582 DEFB130BP0DP73 79 aa7.97□□□□□ -1.13
HDAC4-210ENST00000493582 DEFB130AP0DP74 79 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms