RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 NISCHQ9Y2I1 1504 aa21.86■■□□□ 1.09
HDAC4-210ENST00000493582 HRCP23327 699 aa19.89■□□□□ 0.77
HDAC4-210ENST00000493582 PPARGC1BQ86YN6 1023 aaKnown RBP19.58■□□□□ 0.73
HDAC4-210ENST00000493582 SHROOM4Q9ULL8 1493 aa19.55■□□□□ 0.72
HDAC4-210ENST00000493582 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
HDAC4-210ENST00000493582 PCGF6Q9BYE7 350 aa19.52■□□□□ 0.72
HDAC4-210ENST00000493582 MYO15BQ96JP2 1530 aa19.31■□□□□ 0.68
HDAC4-210ENST00000493582 PELP1Q8IZL8 1130 aaKnown RBP19.21■□□□□ 0.67
HDAC4-210ENST00000493582 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
HDAC4-210ENST00000493582 SCAF1Q9H7N4 1312 aaKnown RBP18.9■□□□□ 0.62
HDAC4-210ENST00000493582 LOC105371045A0A1W2PR82 267 aa18.85■□□□□ 0.61
HDAC4-210ENST00000493582 DCAF1Q9Y4B6 1507 aa18.82■□□□□ 0.6
HDAC4-210ENST00000493582 TRIM26Q12899 539 aaPredicted RBP18.78■□□□□ 0.6
HDAC4-210ENST00000493582 ZEB1P37275 1124 aaPredicted RBP18.6■□□□□ 0.57
HDAC4-210ENST00000493582 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
HDAC4-210ENST00000493582 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
HDAC4-210ENST00000493582 MYT1Q01538 1121 aa18.43■□□□□ 0.54
HDAC4-210ENST00000493582 ACIN1Q9UKV3 1341 aaKnown RBP18.38■□□□□ 0.53
HDAC4-210ENST00000493582 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
HDAC4-210ENST00000493582 NEUROD1Q13562 356 aa18.37■□□□□ 0.53
HDAC4-210ENST00000493582 GTF3C3Q9Y5Q9 886 aa18.28■□□□□ 0.52
HDAC4-210ENST00000493582 CENPBP07199 599 aaPredicted RBP18.1■□□□□ 0.49
HDAC4-210ENST00000493582 FAM9AQ8IZU1 332 aaPredicted RBP18.1■□□□□ 0.49
HDAC4-210ENST00000493582 EHMT2Q96KQ7 1210 aa18.1■□□□□ 0.49
HDAC4-210ENST00000493582 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.07■□□□□ 0.48
HDAC4-210ENST00000493582 DIEXFQ68CQ4 756 aaKnown RBP18.05■□□□□ 0.48
HDAC4-210ENST00000493582 TRIM41Q8WV44 630 aa18■□□□□ 0.47
HDAC4-210ENST00000493582 CCER1Q8TC90 406 aaPredicted RBP18■□□□□ 0.47
HDAC4-210ENST00000493582 YTHDC1Q96MU7 727 aaKnown RBP17.83■□□□□ 0.45
HDAC4-210ENST00000493582 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
HDAC4-210ENST00000493582 ABCC9O60706 1549 aa17.66■□□□□ 0.42
HDAC4-210ENST00000493582 ZNF316A6NFI3 1004 aaPredicted RBP17.65■□□□□ 0.42
HDAC4-210ENST00000493582 RSF1Q96T23 1441 aaPredicted RBP17.61■□□□□ 0.41
HDAC4-210ENST00000493582 MIER1Q8N108 512 aa17.6■□□□□ 0.41
HDAC4-210ENST00000493582 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
HDAC4-210ENST00000493582 BCL11AQ9H165 835 aa17.39■□□□□ 0.37
HDAC4-210ENST00000493582 ANP32EQ9BTT0 268 aa17.35■□□□□ 0.37
HDAC4-210ENST00000493582 SCRIBQ14160 1630 aa17.35■□□□□ 0.37
HDAC4-210ENST00000493582 SUPT16HQ9Y5B9 1047 aaKnown RBP17.35■□□□□ 0.37
HDAC4-210ENST00000493582 TSHZ2Q9NRE2 1034 aa17.3■□□□□ 0.36
HDAC4-210ENST00000493582 WRNQ14191 1432 aaPredicted RBP eCLIP17.26■□□□□ 0.35
HDAC4-210ENST00000493582 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
HDAC4-210ENST00000493582 CSRNP3Q8WYN3 585 aa17.22■□□□□ 0.35
HDAC4-210ENST00000493582 CEP162Q5TB80 1403 aa17.21■□□□□ 0.35
HDAC4-210ENST00000493582 CLSPNQ9HAW4 1339 aa17.15■□□□□ 0.34
HDAC4-210ENST00000493582 CECR2Q9BXF3 1484 aa17.11■□□□□ 0.33
HDAC4-210ENST00000493582 UBTFP17480 764 aaKnown RBP17.1■□□□□ 0.33
HDAC4-210ENST00000493582 MROH2BQ7Z745 1585 aa17.06■□□□□ 0.32
HDAC4-210ENST00000493582 TNIKQ9UKE5 1360 aa17.05■□□□□ 0.32
HDAC4-210ENST00000493582 BCANQ96GW7 911 aa17.05■□□□□ 0.32
HDAC4-210ENST00000493582 CCDC88BA6NC98 1476 aa17.03■□□□□ 0.32
HDAC4-210ENST00000493582 WIZO95785 1651 aa17.03■□□□□ 0.32
HDAC4-210ENST00000493582 SOGA1O94964 1423 aa17.01■□□□□ 0.31
HDAC4-210ENST00000493582 EIF4G1Q04637 1599 aaKnown RBP17.01■□□□□ 0.31
HDAC4-210ENST00000493582 ABCC8Q09428 1581 aa16.98■□□□□ 0.31
HDAC4-210ENST00000493582 KCNH8Q96L42 1107 aa16.95■□□□□ 0.3
HDAC4-210ENST00000493582 BAZ1AQ9NRL2 1556 aaPredicted RBP16.92■□□□□ 0.3
HDAC4-210ENST00000493582 RUSC2Q8N2Y8 1516 aa16.91■□□□□ 0.3
HDAC4-210ENST00000493582 FKBP8Q14318 412 aa16.9■□□□□ 0.3
HDAC4-210ENST00000493582 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
HDAC4-210ENST00000493582 NACADO15069 1562 aa16.82■□□□□ 0.28
HDAC4-210ENST00000493582 APLP2Q06481 763 aa16.81■□□□□ 0.28
HDAC4-210ENST00000493582 DHX57Q6P158 1386 aaKnown RBP16.8■□□□□ 0.28
HDAC4-210ENST00000493582 ITGAEP38570 1179 aa16.79■□□□□ 0.28
HDAC4-210ENST00000493582 GOLGA3Q08378 1498 aa16.79■□□□□ 0.28
HDAC4-210ENST00000493582 RANGAP1P46060 587 aaPredicted RBP16.78■□□□□ 0.28
HDAC4-210ENST00000493582 MSH5O43196 834 aa16.77■□□□□ 0.28
HDAC4-210ENST00000493582 EEA1Q15075 1411 aa16.76■□□□□ 0.27
HDAC4-210ENST00000493582 CLIP1P30622 1438 aa16.73■□□□□ 0.27
HDAC4-210ENST00000493582 NEFLP07196 543 aa16.7■□□□□ 0.26
HDAC4-210ENST00000493582 TOP2AP11388 1531 aaKnown RBP16.7■□□□□ 0.26
HDAC4-210ENST00000493582 VPS8Q8N3P4 1428 aa16.69■□□□□ 0.26
HDAC4-210ENST00000493582 PRKCSHP14314 528 aaPredicted RBP16.69■□□□□ 0.26
HDAC4-210ENST00000493582 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
HDAC4-210ENST00000493582 DDX10Q13206 875 aaKnown RBP16.64■□□□□ 0.25
HDAC4-210ENST00000493582 TRIM52Q96A61 297 aa16.64■□□□□ 0.25
HDAC4-210ENST00000493582 CEP164Q9UPV0 1460 aa16.6■□□□□ 0.25
HDAC4-210ENST00000493582 ERICH6Q7L0X2 663 aa16.58■□□□□ 0.24
HDAC4-210ENST00000493582 SMARCA4P51532 1647 aa16.57■□□□□ 0.24
HDAC4-210ENST00000493582 KANK4Q5T7N3 995 aaPredicted RBP16.55■□□□□ 0.24
HDAC4-210ENST00000493582 FANCIQ9NVI1 1328 aa16.52■□□□□ 0.24
HDAC4-210ENST00000493582 KIF21BO75037 1637 aa16.51■□□□□ 0.23
HDAC4-210ENST00000493582 RAPGEF2Q9Y4G8 1499 aa16.5■□□□□ 0.23
HDAC4-210ENST00000493582 HIRIP3Q9BW71 556 aaPredicted RBP16.5■□□□□ 0.23
HDAC4-210ENST00000493582 IRX6P78412 446 aaPredicted RBP16.48■□□□□ 0.23
HDAC4-210ENST00000493582 DEKP35659 375 aaKnown RBP16.47■□□□□ 0.23
HDAC4-210ENST00000493582 CDK11AQ9UQ88 783 aaPredicted RBP16.47■□□□□ 0.23
HDAC4-210ENST00000493582 PPP1R15AO75807 674 aaPredicted RBP16.46■□□□□ 0.23
HDAC4-210ENST00000493582 ANP32CO43423 234 aa16.42■□□□□ 0.22
HDAC4-210ENST00000493582 SIN3AQ96ST3 1273 aa16.42■□□□□ 0.22
HDAC4-210ENST00000493582 BAZ1BQ9UIG0 1483 aaKnown RBP16.41■□□□□ 0.22
HDAC4-210ENST00000493582 CCER2I3L3R5 266 aa16.4■□□□□ 0.22
HDAC4-210ENST00000493582 RRBP1Q9P2E9 1410 aaKnown RBP16.38■□□□□ 0.21
HDAC4-210ENST00000493582 SYNJ1O43426 1573 aa16.38■□□□□ 0.21
HDAC4-210ENST00000493582 RAB3GAP2Q9H2M9 1393 aa16.37■□□□□ 0.21
HDAC4-210ENST00000493582 ANO8Q9HCE9 1232 aaPredicted RBP16.37■□□□□ 0.21
HDAC4-210ENST00000493582 WDR97A6NE52 1622 aa16.37■□□□□ 0.21
HDAC4-210ENST00000493582 UNC13AQ9UPW8 1703 aa16.37■□□□□ 0.21
HDAC4-210ENST00000493582 CCNB3Q8WWL7 1395 aa16.36■□□□□ 0.21
HDAC4-210ENST00000493582 MAPKBP1O60336 1514 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms