RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TRAV13-1A0A0B4J241 112 aa8.81□□□□□ -1
UPF3A-204ENST00000475218 SYCNQ0VAF6 134 aa8.81□□□□□ -1
UPF3A-204ENST00000475218 COX7A2LO14548 114 aa8.81□□□□□ -1
UPF3A-204ENST00000475218 PRR3P79522 188 aaKnown RBP8.8□□□□□ -1
UPF3A-204ENST00000475218 SERTAD4-AS1Q5TG53 156 aa8.8□□□□□ -1
UPF3A-204ENST00000475218 PET117Q6UWS5 81 aa8.8□□□□□ -1
UPF3A-204ENST00000475218 C5orf38Q86SI9 138 aa8.8□□□□□ -1
UPF3A-204ENST00000475218 UBR4Q5T4S7 5183 aa8.8□□□□□ -1
UPF3A-204ENST00000475218 ZNF561-AS1K7EIQ3 104 aa8.79□□□□□ -1
UPF3A-204ENST00000475218 FAM19A2Q8N3H0 131 aa8.79□□□□□ -1
UPF3A-204ENST00000475218 HSPB8Q9UJY1 196 aa8.79□□□□□ -1
UPF3A-204ENST00000475218 HSBP1L1C9JCN9 74 aa8.78□□□□□ -1
UPF3A-204ENST00000475218 UBE2V1Q13404 147 aa8.78□□□□□ -1
UPF3A-204ENST00000475218 C7orf33Q8WU49 177 aa8.78□□□□□ -1
UPF3A-204ENST00000475218 PMCHL2Q9BQD1 86 aa8.78□□□□□ -1
UPF3A-204ENST00000475218 PTTG1IPP53801 180 aa8.78□□□□□ -1
UPF3A-204ENST00000475218 IGHV3OR16-9A0A0B4J2B5 98 aa8.77□□□□□ -1.01
UPF3A-204ENST00000475218 PPBPP02775 128 aa8.77□□□□□ -1.01
UPF3A-204ENST00000475218 MALP21145 153 aa8.77□□□□□ -1.01
UPF3A-204ENST00000475218 MRPS36P82909 103 aaKnown RBP8.77□□□□□ -1.01
UPF3A-204ENST00000475218 SMAGPQ0VAQ4 97 aa8.77□□□□□ -1.01
UPF3A-204ENST00000475218 LINC00474Q9P2X8 69 aa8.77□□□□□ -1.01
UPF3A-204ENST00000475218 A0A1W2PNN7 141 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.76□□□□□ -1.01
UPF3A-204ENST00000475218 SYS1-DBNDD2H3BUS1 97 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 LEPROTL1O95214 131 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 MAP1LC3CQ9BXW4 147 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 SPANXA1Q9NS26 97 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 ORMDL3Q8N138 153 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 C2orf48Q96LS8 159 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 PRELID3AQ96N28 172 aa8.76□□□□□ -1.01
UPF3A-204ENST00000475218 A0A0J9YXV3 536 aa8.75□□□□□ -1.01
UPF3A-204ENST00000475218 SLC25A34Q6PIV7 304 aa8.75□□□□□ -1.01
UPF3A-204ENST00000475218 CAMK2N2Q96S95 79 aa8.75□□□□□ -1.01
UPF3A-204ENST00000475218 LOC107984640A0A0U1RRK4 108 aa8.74□□□□□ -1.01
UPF3A-204ENST00000475218 APOMO95445 188 aa8.74□□□□□ -1.01
UPF3A-204ENST00000475218 SPAG11BQ08648 103 aa8.74□□□□□ -1.01
UPF3A-204ENST00000475218 GAGE2BQ13066 116 aa8.74□□□□□ -1.01
UPF3A-204ENST00000475218 IGLV4-3A0A075B6K6 122 aa8.73□□□□□ -1.01
UPF3A-204ENST00000475218 HINT1P49773 126 aaPredicted RBP8.73□□□□□ -1.01
UPF3A-204ENST00000475218 C10orf25Q5T742 122 aa8.73□□□□□ -1.01
UPF3A-204ENST00000475218 SRSF9Q13242 221 aaKnown RBP eCLIP8.73□□□□□ -1.01
UPF3A-204ENST00000475218 C21orf62-AS1Q17RA5 79 aa8.73□□□□□ -1.01
UPF3A-204ENST00000475218 URB1-AS1Q96HZ7 61 aa8.73□□□□□ -1.01
UPF3A-204ENST00000475218 PKIGQ9Y2B9 76 aa8.73□□□□□ -1.01
UPF3A-204ENST00000475218 ODF1Q14990 250 aa8.72□□□□□ -1.01
UPF3A-204ENST00000475218 PLA2G2DQ9UNK4 145 aa8.72□□□□□ -1.01
UPF3A-204ENST00000475218 PYGO1Q9Y3Y4 419 aa8.72□□□□□ -1.01
UPF3A-204ENST00000475218 RNF151Q2KHN1 245 aa8.71□□□□□ -1.01
UPF3A-204ENST00000475218 LINC00242Q5T6M2 205 aa8.71□□□□□ -1.01
UPF3A-204ENST00000475218 LINC01545Q5VT33 79 aa8.71□□□□□ -1.01
UPF3A-204ENST00000475218 ATOH7Q8N100 152 aa8.71□□□□□ -1.01
UPF3A-204ENST00000475218 LINC01600Q96MT4 127 aa8.71□□□□□ -1.01
UPF3A-204ENST00000475218 LOC389332A0A1B0GUA5 103 aa8.71□□□□□ -1.02
UPF3A-204ENST00000475218 KIAA0087Q14695 138 aa8.71□□□□□ -1.02
UPF3A-204ENST00000475218 C9orf116Q5BN46 136 aaPredicted RBP8.71□□□□□ -1.02
UPF3A-204ENST00000475218 ZC2HC1BQ5TFG8 222 aa8.71□□□□□ -1.02
UPF3A-204ENST00000475218 LINC00173Q6ZV60 143 aa8.71□□□□□ -1.02
UPF3A-204ENST00000475218 SEC11AP67812 179 aa8.7□□□□□ -1.02
UPF3A-204ENST00000475218 MRPL35Q9NZE8 188 aaKnown RBP8.7□□□□□ -1.02
UPF3A-204ENST00000475218 IFI27P40305 119 aaPredicted RBP8.69□□□□□ -1.02
UPF3A-204ENST00000475218 BVES-AS1Q5T3Y7 98 aa8.69□□□□□ -1.02
UPF3A-204ENST00000475218 UNQ6190/PRO20217Q6UXQ8 127 aa8.69□□□□□ -1.02
UPF3A-204ENST00000475218 C6orf48Q9UBA6 75 aa8.69□□□□□ -1.02
UPF3A-204ENST00000475218 A0A087WZ39 114 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 RPL18AQ02543 176 aaKnown RBP8.68□□□□□ -1.02
UPF3A-204ENST00000475218 SPINK6Q6UWN8 80 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 Q6ZRP5 223 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 FA2HQ7L5A8 372 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 Q8N8P6 123 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 MAP1LC3AQ9H492 121 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 COX8AP10176 69 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 UBE2D1P51668 147 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 VAMP3Q15836 100 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 KRTAP11-1Q8IUC1 163 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 KRTAP7-1Q8IUC3 87 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 TMEM141Q96I45 108 aa8.68□□□□□ -1.02
UPF3A-204ENST00000475218 FAM168BA1KXE4 195 aa8.67□□□□□ -1.02
UPF3A-204ENST00000475218 PCP4P48539 62 aa8.67□□□□□ -1.02
UPF3A-204ENST00000475218 KRTAP10-8P60410 259 aa8.67□□□□□ -1.02
UPF3A-204ENST00000475218 PHF5AQ7RTV0 110 aaKnown RBP8.67□□□□□ -1.02
UPF3A-204ENST00000475218 AMELXQ99217 191 aa8.67□□□□□ -1.02
UPF3A-204ENST00000475218 PSORS1C2Q9UIG4 136 aa8.67□□□□□ -1.02
UPF3A-204ENST00000475218 IGIPA6NJ69 53 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 F8WDY8 70 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 TAX1BP3O14907 124 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 TLX1NBP0CAT3 122 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 C2orf66Q6UXQ4 117 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 NDUFA1O15239 70 aa8.66□□□□□ -1.02
UPF3A-204ENST00000475218 LRP2P98164 4655 aa8.65□□□□□ -1.02
UPF3A-204ENST00000475218 C2orf82Q6UX34 121 aa8.65□□□□□ -1.02
UPF3A-204ENST00000475218 CYSLTR1Q9Y271 337 aa8.65□□□□□ -1.02
UPF3A-204ENST00000475218 A6NDN8 102 aa8.64□□□□□ -1.03
UPF3A-204ENST00000475218 GTF2H5Q6ZYL4 71 aa8.63□□□□□ -1.03
UPF3A-204ENST00000475218 FAM19A3Q7Z5A8 133 aa8.63□□□□□ -1.03
UPF3A-204ENST00000475218 K7ERU9 68 aa8.62□□□□□ -1.03
UPF3A-204ENST00000475218 ORMDL2Q53FV1 153 aa8.62□□□□□ -1.03
UPF3A-204ENST00000475218 LINC01561Q8N1V8 128 aa8.62□□□□□ -1.03
UPF3A-204ENST00000475218 H3BRM9 83 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 K7EMI3 77 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms