RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 UBE2BP63146 152 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 Q6ZS52 159 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 VMO1Q7Z5L0 202 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 HEATR1Q9H583 2144 aaKnown RBP2.22□□□□□ -2.05
VPS54-204ENST00000416400 C14orf132Q9NPU4 83 aa2.22□□□□□ -2.05
VPS54-204ENST00000416400 IGHV3-64A0A075B6Q5 118 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 LOC110117498A0A087WWA1 95 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 A0A1B0GW54 56 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 NDUFB1O75438 58 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 TFF1P04155 84 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 RNASE3P12724 160 aaKnown RBP2.21□□□□□ -2.06
VPS54-204ENST00000416400 CCL3L1P16619 93 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 RPL39P62891 51 aaKnown RBP2.21□□□□□ -2.06
VPS54-204ENST00000416400 MINOS1Q5TGZ0 78 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 ENHOQ6UWT2 76 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 CNEP1R1Q8N9A8 125 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 CYP4F30PQ9H0H9 118 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 MINOS1-NBL1R4GNA1 71 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 PLXNB1O43157 2135 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 MYOFQ9NZM1 2061 aa2.21□□□□□ -2.06
VPS54-204ENST00000416400 MUC22E2RYF6 1773 aaPredicted RBP2.21□□□□□ -2.06
VPS54-204ENST00000416400 ESPL1Q14674 2120 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 COL5A1P20908 1838 aaPredicted RBP2.2□□□□□ -2.06
VPS54-204ENST00000416400 USF3Q68DE3 2245 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 A0A087WVE0 104 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 GNRH2O43555 120 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 ZNF73O43830 326 aaPredicted RBP2.2□□□□□ -2.06
VPS54-204ENST00000416400 LY6HO94772 140 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 FAM229BQ4G0N7 80 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 ATP11AUNQ6ZP68 121 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 PHF5AQ7RTV0 110 aaKnown RBP2.2□□□□□ -2.06
VPS54-204ENST00000416400 TMEM254Q8TBM7 123 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 USMG5Q96IX5 58 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 C20orf166-AS1Q96NR2 134 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 LIMD2Q9BT23 127 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 DSCAML1Q8TD84 2053 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 MYO9BQ13459 2157 aa2.2□□□□□ -2.06
VPS54-204ENST00000416400 TANC2Q9HCD6 1990 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 UNC13CQ8NB66 2214 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 NCKAP5O14513 1909 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 IGHV3-73A0A0B4J1V6 119 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 H3BUA1 57 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 NDUFA4O00483 81 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 APELAP0DMC3 54 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 CCL5P13501 91 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 HAMPP81172 84 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 MYO7BQ6PIF6 2116 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 KTN1-AS1Q86SY8 53 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 Q8N2B8 174 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 SMIM11BQ8TCY0 68 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 RNASE6Q93091 150 aaKnown RBP2.19□□□□□ -2.06
VPS54-204ENST00000416400 ZNF625Q96I27 306 aaPredicted RBP2.19□□□□□ -2.06
VPS54-204ENST00000416400 CYSTM1Q9H1C7 97 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 C22orf24Q9Y442 160 aa2.19□□□□□ -2.06
VPS54-204ENST00000416400 PRRC2BQ5JSZ5 2229 aaKnown RBP2.19□□□□□ -2.06
VPS54-204ENST00000416400 PCDH15Q96QU1 1955 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 CLPSL1A2RUU4 121 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 NCR3O14931 201 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 LINC00158P58513 81 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 ELOF1P60002 83 aaKnown RBP2.18□□□□□ -2.06
VPS54-204ENST00000416400 NREPQ16612 68 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 DEFB114Q30KQ6 69 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 FAM74A4Q5TZK3 123 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 DEFB119Q8N690 84 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 Q8N814 137 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 LINC00474Q9P2X8 69 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 CDKN2A-AS1Q9UH64 79 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 PTPRSQ13332 1948 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 RTTNQ86VV8 2226 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 ZNF407Q9C0G0 2248 aa2.18□□□□□ -2.06
VPS54-204ENST00000416400 SNRNP200O75643 2136 aaKnown RBP2.17□□□□□ -2.06
VPS54-204ENST00000416400 TRBV6-8A0A0A6YYG3 113 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 TRBV7-4A0A0J9YYF1 115 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 TRBV10-1A0A0K0K1A3 114 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 TRBV6-4A0A1B0GX49 114 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 hDV103S1A0JD37 113 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 COX17Q14061 63 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 COX7B2Q8TF08 81 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 SNURFQ9Y675 71 aa2.17□□□□□ -2.06
VPS54-204ENST00000416400 KIAA1549Q9HCM3 1950 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 IGKV2-29A2NJV5 120 aaPredicted RBP2.16□□□□□ -2.06
VPS54-204ENST00000416400 SS18Q15532 418 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 Q6ZQT0 140 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 LCA10Q71F78 164 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 Q8N6K4 173 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 LINC00467Q9BRT7 94 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 BPESC1Q9GZL8 116 aa2.16□□□□□ -2.06
VPS54-204ENST00000416400 TET1Q8NFU7 2136 aa2.15□□□□□ -2.06
VPS54-204ENST00000416400 BPTFQ12830 3046 aa2.15□□□□□ -2.06
VPS54-204ENST00000416400 RP1P56715 2156 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 TRAV10A0A0B4J240 114 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 ODF3BA8MYP8 253 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 C3orf84H3BNL1 204 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 H3BPC8 53 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 M0R378 163 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 CCL18P55774 89 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 ASB16-AS1Q495Z4 193 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.15□□□□□ -2.07
VPS54-204ENST00000416400 SOSTDC1Q6X4U4 206 aa2.15□□□□□ -2.07
VPS54-204ENST00000416400 LINC00269Q8N2A0 174 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms