RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TOMM7Q9P0U1 55 aa13.2□□□□□ -0.3
CLN3-205ENST00000359984 APOMO95445 188 aa13.19□□□□□ -0.3
CLN3-205ENST00000359984 COX7B2Q8TF08 81 aa13.19□□□□□ -0.3
CLN3-205ENST00000359984 KIAA0087Q14695 138 aa13.17□□□□□ -0.3
CLN3-205ENST00000359984 Q8IZM0 81 aa13.16□□□□□ -0.3
CLN3-205ENST00000359984 C15orf56Q8N910 161 aa13.16□□□□□ -0.3
CLN3-205ENST00000359984 NDUFA12Q9UI09 145 aa13.16□□□□□ -0.3
CLN3-205ENST00000359984 C9orf118A6NHY6 69 aa13.15□□□□□ -0.3
CLN3-205ENST00000359984 PRSS2P07478 247 aa13.15□□□□□ -0.3
CLN3-205ENST00000359984 C6orf226Q5I0X4 101 aa13.15□□□□□ -0.3
CLN3-205ENST00000359984 HIST1H4GQ99525 98 aa13.15□□□□□ -0.3
CLN3-205ENST00000359984 KMT2AQ03164 3969 aa13.15□□□□□ -0.3
CLN3-205ENST00000359984 SPAG11BQ08648 103 aa13.14□□□□□ -0.31
CLN3-205ENST00000359984 UBE2V1Q13404 147 aa13.14□□□□□ -0.31
CLN3-205ENST00000359984 SMIM13P0DJ93 91 aa13.14□□□□□ -0.31
CLN3-205ENST00000359984 SCGB1D4Q6XE38 83 aa13.14□□□□□ -0.31
CLN3-205ENST00000359984 Q6ZRN7 208 aaPredicted RBP13.14□□□□□ -0.31
CLN3-205ENST00000359984 LINC00526Q96FQ7 95 aa13.14□□□□□ -0.31
CLN3-205ENST00000359984 NDUFA1O15239 70 aa13.13□□□□□ -0.31
CLN3-205ENST00000359984 PSCAO43653 123 aa13.13□□□□□ -0.31
CLN3-205ENST00000359984 HIGD2BQ4VC39 106 aa13.13□□□□□ -0.31
CLN3-205ENST00000359984 CFAP161Q6P656 301 aa13.13□□□□□ -0.31
CLN3-205ENST00000359984 ZNF625Q96I27 306 aaPredicted RBP13.13□□□□□ -0.31
CLN3-205ENST00000359984 USP17L23D6RBM5 183 aa13.12□□□□□ -0.31
CLN3-205ENST00000359984 PTTG1IPP53801 180 aa13.12□□□□□ -0.31
CLN3-205ENST00000359984 VAMP3Q15836 100 aa13.12□□□□□ -0.31
CLN3-205ENST00000359984 C2orf82Q6UX34 121 aa13.12□□□□□ -0.31
CLN3-205ENST00000359984 C6orf223Q8N319 242 aa13.12□□□□□ -0.31
CLN3-205ENST00000359984 SPANXB1Q9NS25 103 aaPredicted RBP13.12□□□□□ -0.31
CLN3-205ENST00000359984 DNAH10Q8IVF4 4471 aa13.11□□□□□ -0.31
CLN3-205ENST00000359984 DNAH6Q9C0G6 4158 aa13.11□□□□□ -0.31
CLN3-205ENST00000359984 A0A1B0GWB2 263 aa13.11□□□□□ -0.31
CLN3-205ENST00000359984 A6NJY4 79 aa13.11□□□□□ -0.31
CLN3-205ENST00000359984 LECT2O14960 151 aa13.1□□□□□ -0.31
CLN3-205ENST00000359984 NHP2Q9NX24 153 aaKnown RBP13.1□□□□□ -0.31
CLN3-205ENST00000359984 GVQW2A0A096LPI5 108 aaPredicted RBP13.1□□□□□ -0.31
CLN3-205ENST00000359984 RAB37Q96AX2 223 aa13.1□□□□□ -0.31
CLN3-205ENST00000359984 ZNF561-AS1K7EIQ3 104 aa13.09□□□□□ -0.31
CLN3-205ENST00000359984 K7ERJ3 54 aa13.09□□□□□ -0.31
CLN3-205ENST00000359984 CKS1BP61024 79 aa13.09□□□□□ -0.31
CLN3-205ENST00000359984 WFDC2Q14508 124 aa13.09□□□□□ -0.31
CLN3-205ENST00000359984 NTN5Q8WTR8 489 aaPredicted RBP13.09□□□□□ -0.31
CLN3-205ENST00000359984 A0A0J9YXY3 114 aa13.08□□□□□ -0.32
CLN3-205ENST00000359984 H3BUT2 72 aa13.08□□□□□ -0.32
CLN3-205ENST00000359984 C1orf134Q5TEV5 83 aa13.08□□□□□ -0.32
CLN3-205ENST00000359984 LCE6AA0A183 80 aa13.07□□□□□ -0.32
CLN3-205ENST00000359984 CXCL5P42830 114 aa13.07□□□□□ -0.32
CLN3-205ENST00000359984 HERV-K104P63124 156 aa13.07□□□□□ -0.32
CLN3-205ENST00000359984 SRSF9Q13242 221 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLN3-205ENST00000359984 SFTA2Q6UW10 78 aa13.06□□□□□ -0.32
CLN3-205ENST00000359984 UNQ6190/PRO20217Q6UXQ8 127 aa13.06□□□□□ -0.32
CLN3-205ENST00000359984 C10orf25Q5T742 122 aa13.06□□□□□ -0.32
CLN3-205ENST00000359984 NAA38Q9BRA0 125 aaKnown RBP13.06□□□□□ -0.32
CLN3-205ENST00000359984 LRCOL1A6NCL2 159 aa13.05□□□□□ -0.32
CLN3-205ENST00000359984 C2orf48Q96LS8 159 aa13.05□□□□□ -0.32
CLN3-205ENST00000359984 A0A1W2PPM0 123 aa13.04□□□□□ -0.32
CLN3-205ENST00000359984 CAMK2N2Q96S95 79 aa13.04□□□□□ -0.32
CLN3-205ENST00000359984 DNAH2Q9P225 4427 aa13.03□□□□□ -0.32
CLN3-205ENST00000359984 LITAFQ99732 161 aa13.02□□□□□ -0.33
CLN3-205ENST00000359984 HYDINQ4G0P3 5121 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 F8WDY8 70 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 SLPIP03973 132 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 MEIG1Q5JSS6 88 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 Q6ZRU5 148 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 SACSQ9NZJ4 4579 aa13.01□□□□□ -0.33
CLN3-205ENST00000359984 K7EP34 96 aa13□□□□□ -0.33
CLN3-205ENST00000359984 C9orf116Q5BN46 136 aaPredicted RBP13□□□□□ -0.33
CLN3-205ENST00000359984 A0A0U1RRA0 63 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 GAGE10A6NGK3 116 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 TIMM17BO60830 172 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 SYCNQ0VAF6 134 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 ADAMTSL4-AS1Q5T5F5 129 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 C6orf48Q9UBA6 75 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 ERG28Q9UKR5 140 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 C14orf177Q52M58 125 aa12.99□□□□□ -0.33
CLN3-205ENST00000359984 TMEM238C9JI98 176 aa12.98□□□□□ -0.33
CLN3-205ENST00000359984 CIRBPQ14011 172 aaKnown RBP12.98□□□□□ -0.33
CLN3-205ENST00000359984 FABP2P12104 132 aa12.97□□□□□ -0.33
CLN3-205ENST00000359984 PFN2P35080 140 aa12.97□□□□□ -0.33
CLN3-205ENST00000359984 GTF2H5Q6ZYL4 71 aa12.97□□□□□ -0.33
CLN3-205ENST00000359984 A0A087WTM6 91 aa12.97□□□□□ -0.33
CLN3-205ENST00000359984 TRBV30A0A0K0K1B3 111 aa12.97□□□□□ -0.33
CLN3-205ENST00000359984 RTL8CO15255 209 aa12.96□□□□□ -0.33
CLN3-205ENST00000359984 LINC00158P58513 81 aa12.96□□□□□ -0.33
CLN3-205ENST00000359984 DAND5Q8N907 189 aa12.96□□□□□ -0.33
CLN3-205ENST00000359984 SPCS1Q9Y6A9 102 aa12.96□□□□□ -0.33
CLN3-205ENST00000359984 CARD19Q96LW7 228 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 CFC1BP0CG36 223 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 CFC1P0CG37 223 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 MUSTN1Q8IVN3 82 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 SPANXDQ9BXN6 97 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 SPANXCQ9NY87 97 aa12.95□□□□□ -0.34
CLN3-205ENST00000359984 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.94□□□□□ -0.34
CLN3-205ENST00000359984 COX17Q14061 63 aa12.94□□□□□ -0.34
CLN3-205ENST00000359984 Q8N814 137 aa12.94□□□□□ -0.34
CLN3-205ENST00000359984 CNBPP62633 177 aaKnown RBP12.93□□□□□ -0.34
CLN3-205ENST00000359984 MIR7-3HGQ8N6C7 128 aa12.93□□□□□ -0.34
CLN3-205ENST00000359984 A4D1N5 150 aa12.92□□□□□ -0.34
CLN3-205ENST00000359984 EIF4EBP3O60516 100 aaPredicted RBP12.92□□□□□ -0.34
CLN3-205ENST00000359984 TNP2Q05952 138 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms