RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 B9D2Q9BPU9 175 aa12.43□□□□□ -0.42
COMMD4-208ENST00000563220 COX6A2Q02221 97 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 LINC00242Q5T6M2 205 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 LYPD5Q6UWN5 251 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 RAB37Q96AX2 223 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 A0A1B0GUV1 79 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 TIRAPP58753 221 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 HERVK_113P61574 105 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 LELP1Q5T871 98 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 FAM19A3Q7Z5A8 133 aa12.42□□□□□ -0.42
COMMD4-208ENST00000563220 FABP2P12104 132 aa12.41□□□□□ -0.42
COMMD4-208ENST00000563220 OCIAD2Q56VL3 154 aa12.4□□□□□ -0.42
COMMD4-208ENST00000563220 GEMIN7Q9H840 131 aaKnown RBP12.4□□□□□ -0.42
COMMD4-208ENST00000563220 Q8N3U1 123 aa12.4□□□□□ -0.42
COMMD4-208ENST00000563220 SPCS1Q9Y6A9 102 aa12.4□□□□□ -0.42
COMMD4-208ENST00000563220 A0A1B0GWB2 263 aa12.39□□□□□ -0.43
COMMD4-208ENST00000563220 TSPEAR-AS2P59090 65 aa12.39□□□□□ -0.43
COMMD4-208ENST00000563220 HIST1H4GQ99525 98 aa12.39□□□□□ -0.43
COMMD4-208ENST00000563220 NHP2Q9NX24 153 aaKnown RBP12.39□□□□□ -0.43
COMMD4-208ENST00000563220 CDKN2A-AS1Q9UH64 79 aa12.39□□□□□ -0.43
COMMD4-208ENST00000563220 IGHV3-64A0A075B6Q5 118 aa12.38□□□□□ -0.43
COMMD4-208ENST00000563220 IGLV5-45A0A087WSX0 123 aa12.38□□□□□ -0.43
COMMD4-208ENST00000563220 TRAV10A0A0B4J240 114 aa12.38□□□□□ -0.43
COMMD4-208ENST00000563220 IGKV3OR2-268A0A0C4DH90 116 aa12.38□□□□□ -0.43
COMMD4-208ENST00000563220 NAA38Q9BRA0 125 aaKnown RBP12.38□□□□□ -0.43
COMMD4-208ENST00000563220 HERVK_113P63121 156 aa12.37□□□□□ -0.43
COMMD4-208ENST00000563220 TRAV8-3A0A0A6YYJ7 113 aa12.36□□□□□ -0.43
COMMD4-208ENST00000563220 LEPROTO15243 131 aa12.36□□□□□ -0.43
COMMD4-208ENST00000563220 K7ERJ3 54 aa12.36□□□□□ -0.43
COMMD4-208ENST00000563220 SPINK8P0C7L1 97 aa12.36□□□□□ -0.43
COMMD4-208ENST00000563220 ZNF815PA8K554 130 aa12.35□□□□□ -0.43
COMMD4-208ENST00000563220 J3QQQ9 107 aa12.35□□□□□ -0.43
COMMD4-208ENST00000563220 K7ERU9 68 aa12.35□□□□□ -0.43
COMMD4-208ENST00000563220 ESRGQ1W209 222 aa12.35□□□□□ -0.43
COMMD4-208ENST00000563220 IGLL5B9A064 214 aa12.34□□□□□ -0.43
COMMD4-208ENST00000563220 COL7A1Q02388 2944 aa12.34□□□□□ -0.43
COMMD4-208ENST00000563220 IGHV1-58A0A0C4DH39 117 aa12.34□□□□□ -0.43
COMMD4-208ENST00000563220 LINC00959A0A1B0GUT2 108 aa12.34□□□□□ -0.43
COMMD4-208ENST00000563220 IGHV3-30-3P0DP02 117 aa12.34□□□□□ -0.43
COMMD4-208ENST00000563220 CLPSL2Q6UWE3 100 aa12.33□□□□□ -0.44
COMMD4-208ENST00000563220 LINC00269Q8N2A0 174 aa12.33□□□□□ -0.44
COMMD4-208ENST00000563220 PLEKHB2Q96CS7 222 aa12.32□□□□□ -0.44
COMMD4-208ENST00000563220 ANGP03950 147 aaKnown RBP12.31□□□□□ -0.44
COMMD4-208ENST00000563220 LGALS3P17931 250 aaKnown RBP12.31□□□□□ -0.44
COMMD4-208ENST00000563220 TMEM238LA0A1B0GVL6 79 aa12.31□□□□□ -0.44
COMMD4-208ENST00000563220 A6NJY4 79 aa12.31□□□□□ -0.44
COMMD4-208ENST00000563220 WFDC10BQ8IUB3 73 aa12.3□□□□□ -0.44
COMMD4-208ENST00000563220 IGHV3OR16-9A0A0B4J2B5 98 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 SMIM1B2RUZ4 78 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 NHLRC4P0CG21 123 aaPredicted RBP12.29□□□□□ -0.44
COMMD4-208ENST00000563220 SCGB1D4Q6XE38 83 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 SPANXB1Q9NS25 103 aaPredicted RBP12.29□□□□□ -0.44
COMMD4-208ENST00000563220 STAB2Q8WWQ8 2551 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 IGLV5-39A0A0G2JS06 123 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 C15orf53Q8NAA6 179 aa12.29□□□□□ -0.44
COMMD4-208ENST00000563220 REG3AQ06141 175 aa12.28□□□□□ -0.44
COMMD4-208ENST00000563220 IGHV3-30P01768 117 aa12.27□□□□□ -0.44
COMMD4-208ENST00000563220 IGHV3-33P01772 117 aa12.27□□□□□ -0.44
COMMD4-208ENST00000563220 IGHV3-30-5P0DP03 117 aa12.27□□□□□ -0.44
COMMD4-208ENST00000563220 SS18Q15532 418 aa12.27□□□□□ -0.44
COMMD4-208ENST00000563220 RNF151Q2KHN1 245 aa12.27□□□□□ -0.44
COMMD4-208ENST00000563220 PRKDCP78527 4128 aaKnown RBP12.27□□□□□ -0.45
COMMD4-208ENST00000563220 XCL1P47992 114 aa12.27□□□□□ -0.45
COMMD4-208ENST00000563220 KLK12Q9UKR0 248 aa12.27□□□□□ -0.45
COMMD4-208ENST00000563220 MEGF8Q7Z7M0 2845 aa12.27□□□□□ -0.45
COMMD4-208ENST00000563220 SRSF9Q13242 221 aaKnown RBP eCLIP12.25□□□□□ -0.45
COMMD4-208ENST00000563220 C5orf38Q86SI9 138 aa12.25□□□□□ -0.45
COMMD4-208ENST00000563220 C10orf126Q8N4M7 172 aa12.25□□□□□ -0.45
COMMD4-208ENST00000563220 PRR34Q9NV39 138 aa12.25□□□□□ -0.45
COMMD4-208ENST00000563220 NDUFA12Q9UI09 145 aa12.25□□□□□ -0.45
COMMD4-208ENST00000563220 IGLV10-54A0A075B6I4 117 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 A0A087WZ39 114 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 F8W1H4 67 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 ZFAND6Q6FIF0 208 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 ENHOQ6UWT2 76 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 VPS25Q9BRG1 176 aa12.24□□□□□ -0.45
COMMD4-208ENST00000563220 CHCHD10Q8WYQ3 142 aaPredicted RBP12.23□□□□□ -0.45
COMMD4-208ENST00000563220 LINC00588Q9Y4M8 146 aa12.23□□□□□ -0.45
COMMD4-208ENST00000563220 PCP4P48539 62 aa12.22□□□□□ -0.45
COMMD4-208ENST00000563220 A0A0J9YXY3 114 aa12.21□□□□□ -0.45
COMMD4-208ENST00000563220 CD164L2Q6UWJ8 174 aa12.21□□□□□ -0.45
COMMD4-208ENST00000563220 PGPEP1Q9NXJ5 209 aa12.2□□□□□ -0.46
COMMD4-208ENST00000563220 NDUFA1O15239 70 aa12.19□□□□□ -0.46
COMMD4-208ENST00000563220 LINC01556Q5JQF7 62 aa12.19□□□□□ -0.46
COMMD4-208ENST00000563220 UBE2WQ96B02 151 aa12.19□□□□□ -0.46
COMMD4-208ENST00000563220 Q9H8V8 135 aa12.19□□□□□ -0.46
COMMD4-208ENST00000563220 CCL18P55774 89 aa12.18□□□□□ -0.46
COMMD4-208ENST00000563220 FOXI1Q12951 378 aa12.18□□□□□ -0.46
COMMD4-208ENST00000563220 COX7B2Q8TF08 81 aa12.18□□□□□ -0.46
COMMD4-208ENST00000563220 ZNF625Q96I27 306 aaPredicted RBP12.17□□□□□ -0.46
COMMD4-208ENST00000563220 TOMM7Q9P0U1 55 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 PRO0461Q9UI25 63 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 H3BMG7 143 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 TSPAN13O95857 204 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 CRPP02741 224 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 DNAH10OSP0CZ25 163 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 LYRM7Q5U5X0 104 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 LINC01561Q8N1V8 128 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 LITAFQ99732 161 aa12.17□□□□□ -0.46
COMMD4-208ENST00000563220 GAGE12HA6NDE8 117 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms