RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 AMELXQ99217 191 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 KRTAP17-1Q9BYP8 105 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 NDUFA4L2Q9NRX3 87 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 ARL2-SNX15V9GYD0 113 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 KIAA1549Q9HCM3 1950 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 GCN1Q92616 2671 aaKnown RBP1.06□□□□□ -2.24
RTF1-207ENST00000561076 BRCA2P51587 3418 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 ARAP2Q8WZ64 1704 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 NINQ8N4C6 2090 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 MYOFQ9NZM1 2061 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 HEATR1Q9H583 2144 aaKnown RBP1.06□□□□□ -2.24
RTF1-207ENST00000561076 RGPD2P0DJD1 1756 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 LAMB2P55268 1798 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 SHANK1Q9Y566 2161 aa1.06□□□□□ -2.24
RTF1-207ENST00000561076 RTTNQ86VV8 2226 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 ANK1P16157 1881 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 MCM3APO60318 1980 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 TNRC6AQ8NDV7 1962 aaKnown RBP1.05□□□□□ -2.24
RTF1-207ENST00000561076 ABCA2Q9BZC7 2435 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 MICAL3Q7RTP6 2002 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 LOC110117498A0A087WWA1 95 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 TRAV22A0A0B4J277 110 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 A0A1B0GWA3 101 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 F2Z2F3 143 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 F8VRH5 84 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 J3QKU1 62 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 HMGN4O00479 90 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 PDCD5O14737 125 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 HCRTO43612 131 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 UBE2D3P61077 147 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 UBE2D2P62837 147 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 KLKP1Q107X0 134 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 COX17Q14061 63 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 FXYD3Q14802 87 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 LCE1FQ5T754 118 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 BAGE2Q86Y30 109 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 ZNF625Q96I27 306 aaPredicted RBP1.05□□□□□ -2.24
RTF1-207ENST00000561076 TMEM14BQ9NUH8 114 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 DDX60LQ5H9U9 1706 aaKnown RBP1.05□□□□□ -2.24
RTF1-207ENST00000561076 ANKRD17O75179 2603 aaKnown RBP1.05□□□□□ -2.24
RTF1-207ENST00000561076 HECTD1Q9ULT8 2610 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 USP24Q9UPU5 2620 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 CENPFP49454 3210 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 NCOR1O75376 2440 aa1.05□□□□□ -2.24
RTF1-207ENST00000561076 ZFHX2Q9C0A1 2572 aaPredicted RBP1.04□□□□□ -2.24
RTF1-207ENST00000561076 MPDZO75970 2070 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 HTTP42858 3142 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 MED12LQ86YW9 2145 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 ALPK2Q86TB3 2170 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 BAZ2BQ9UIF8 2168 aaKnown RBP1.04□□□□□ -2.24
RTF1-207ENST00000561076 MUC3AQ02505 3323 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 COL4A6Q14031 1691 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 BRWD1Q9NSI6 2320 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 PHIPQ8WWQ0 1821 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 PRUNE2Q8WUY3 3088 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 TRBV25-1A0A075B6N4 114 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 NCR3O14931 201 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 UQCR11O14957 56 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 LEPROTL1O95214 131 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 ACYP2P14621 99 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 HMGN3Q15651 99 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 VMO1Q7Z5L0 202 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 ZNF563Q8TA94 476 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 Q9Y3F1 56 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 FBN3Q75N90 2809 aa1.04□□□□□ -2.24
RTF1-207ENST00000561076 TPRP12270 2363 aaKnown RBP1.04□□□□□ -2.24
RTF1-207ENST00000561076 LRRC37A2A6NM11 1700 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 COL4A2P08572 1712 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 DDX60Q8IY21 1712 aaKnown RBP1.03□□□□□ -2.24
RTF1-207ENST00000561076 ASH1LQ9NR48 2969 aaKnown RBP1.03□□□□□ -2.24
RTF1-207ENST00000561076 NOTCH2Q04721 2471 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 TRBV30A0A0K0K1B3 111 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 M0R135 149 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 MGPP08493 103 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 DEFB103AP81534 67 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 NMSQ5H8A3 153 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 UNQ6190/PRO20217Q6UXQ8 127 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 LINC00643Q86TS7 51 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 C5orf56Q8N8D9 126 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 LINC00208Q96KT6 92 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 OBSCN-AS1Q96MR7 158 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 CCL19Q99731 98 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 KRTAP2-2Q9BYT5 123 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 CDC42SE2Q9NRR3 84 aa1.03□□□□□ -2.24
RTF1-207ENST00000561076 LAMA2P24043 3122 aaKnown RBP1.03□□□□□ -2.24
RTF1-207ENST00000561076 DOCK1Q14185 1865 aa1.03□□□□□ -2.25
RTF1-207ENST00000561076 PRRC2BQ5JSZ5 2229 aaKnown RBP1.03□□□□□ -2.25
RTF1-207ENST00000561076 FAM186AA6NE01 2351 aa1.03□□□□□ -2.25
RTF1-207ENST00000561076 FAM208BQ5VWN6 2430 aa1.03□□□□□ -2.25
RTF1-207ENST00000561076 ACACBO00763 2458 aa1.03□□□□□ -2.25
RTF1-207ENST00000561076 RIF1Q5UIP0 2472 aaKnown RBP1.03□□□□□ -2.25
RTF1-207ENST00000561076 EYSQ5T1H1 3165 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.02□□□□□ -2.25
RTF1-207ENST00000561076 TRAV1-2A0A0B4J238 106 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 A0A0G2JMZ2 1700 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 C7orf77A4D0Y5 90 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 FAM223BA6NKX1 122 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 ZSWIM8A7E2V4 1837 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 D6R8Y8 96 aa1.02□□□□□ -2.25
RTF1-207ENST00000561076 H3BUT2 72 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms