RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 COX6A2Q02221 97 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 MAJINQ3KP22 176 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 HIGD2BQ4VC39 106 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 PAPPA-AS1Q5QFB9 102 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 AMMECR1LQ6DCA0 310 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 FA2HQ7L5A8 372 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 C20orf203Q8NBC4 194 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 C18orf32Q8TCD1 76 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 CHCHD1Q96BP2 118 aaKnown RBP4.16□□□□□ -1.74
CD44-221ENST00000526000 TMEM101Q96IK0 257 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 SPANXA1Q9NS26 97 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 PYGO1Q9Y3Y4 419 aa4.16□□□□□ -1.74
CD44-221ENST00000526000 LOC389332A0A1B0GUA5 103 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 GAGE12HA6NDE8 117 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 C1orf196B1AJZ1 125 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 CCL25O15444 150 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 LINC00614P0C842 121 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 IFI27P40305 119 aaPredicted RBP4.15□□□□□ -1.75
CD44-221ENST00000526000 PRR34Q9NV39 138 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 CYSLTR1Q9Y271 337 aa4.15□□□□□ -1.75
CD44-221ENST00000526000 PKHD1L1Q86WI1 4243 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 TRAV8-4A0A0B4J246 113 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 FGF6P10767 208 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 MRPS36P82909 103 aaKnown RBP4.14□□□□□ -1.75
CD44-221ENST00000526000 BAGE3Q86Y29 109 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 OR5A1Q8NGJ0 315 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 C7orf33Q8WU49 177 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 LINC00526Q96FQ7 95 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 TIMM17AQ99595 171 aa4.14□□□□□ -1.75
CD44-221ENST00000526000 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 IGKV2-29A2NJV5 120 aaPredicted RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 HBDP02042 147 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 CNBPP62633 177 aaKnown RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 CIRBPQ14011 172 aaKnown RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 COA6Q5JTJ3 125 aaKnown RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 RNASEKQ6P5S7 137 aaKnown RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 C2orf66Q6UXQ4 117 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 ERASQ7Z444 233 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 STPG4Q8N801 248 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 SPACA4Q8TDM5 124 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 TOMM6Q96B49 74 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 TMEM141Q96I45 108 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 PACRGQ96M98 296 aaPredicted RBP4.13□□□□□ -1.75
CD44-221ENST00000526000 PLAC8Q9NZF1 115 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 UBE2D4Q9Y2X8 147 aa4.13□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BKO60814 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HSBP1O75506 76 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 ATP5LO75964 103 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BJP06899 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BOP23527 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BBP33778 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BDP58876 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BCP62807 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST2H2BEQ16778 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.12□□□□□ -1.75
CD44-221ENST00000526000 Q6ZN92 141 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 ZNF664Q8N3J9 261 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 C15orf56Q8N910 161 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BHQ93079 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 LINC01600Q96MT4 127 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BNQ99877 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 HIST1H2BMQ99879 126 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 CDC42SE2Q9NRR3 84 aa4.12□□□□□ -1.75
CD44-221ENST00000526000 A0A096LNI7 61 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 IGIPA6NJ69 53 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.11□□□□□ -1.75
CD44-221ENST00000526000 KRTAP10-8P60410 259 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 RPL39P62891 51 aaKnown RBP4.11□□□□□ -1.75
CD44-221ENST00000526000 SEC11AP67812 179 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 PRR3P79522 188 aaKnown RBP4.11□□□□□ -1.75
CD44-221ENST00000526000 TEX43Q6ZNM6 134 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 URB1-AS1Q96HZ7 61 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 SCGB3A1Q96QR1 104 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 C2orf88Q9BSF0 95 aa4.11□□□□□ -1.75
CD44-221ENST00000526000 LRP2P98164 4655 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 IGLV4-3A0A075B6K6 122 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 A0A0J9YXV3 536 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 SS18Q15532 418 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 PDZD11Q5EBL8 140 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 CFAP161Q6P656 301 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 CHCHD10Q8WYQ3 142 aaPredicted RBP4.1□□□□□ -1.75
CD44-221ENST00000526000 AMELXQ99217 191 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 VCX2Q9H322 139 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 HSPB8Q9UJY1 196 aa4.1□□□□□ -1.75
CD44-221ENST00000526000 A0A096LNJ9 63 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 SERF1AO75920 110 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 LEPROTL1O95214 131 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 S100A6P06703 90 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 XCL1P47992 114 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 AKR1D1P51857 326 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 C4orf48Q5BLP8 95 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 FAM19A3Q7Z5A8 133 aa4.09□□□□□ -1.75
CD44-221ENST00000526000 TRAV12-1A0A0B4J245 112 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 LINC00959A0A1B0GUT2 108 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 IFITM10A6NMD0 228 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 LINC00310P59036 64 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 GAGE2BQ13066 116 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 SRSF9Q13242 221 aaKnown RBP eCLIP4.08□□□□□ -1.76
CD44-221ENST00000526000 PMVKQ15126 192 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms