RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 MBD5Q9P267 1494 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 TRAV12-3A0A0B4J271 114 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 SPCS2Q15005 226 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 SLC48A1Q6P1K1 146 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 TSTD1Q8NFU3 115 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 C10orf82Q8WW14 230 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 LAMC1P11047 1609 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 RNF17Q9BXT8 1623 aaKnown RBP0.19□□□□□ -2.38
CD44-215ENST00000525241 SOGA1O94964 1423 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 VPS13BQ7Z7G8 4022 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 URB1O60287 2271 aaKnown RBP0.18□□□□□ -2.38
CD44-215ENST00000525241 NALCNQ8IZF0 1738 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 MAGI2Q86UL8 1455 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 PXDNQ92626 1479 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 ADCY10Q96PN6 1610 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 GVQW2A0A096LPI5 108 aaPredicted RBP0.18□□□□□ -2.38
CD44-215ENST00000525241 PIRTP0C851 137 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 UBE2D1P51668 147 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 SCIMPQ6UWF3 145 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 LZICQ8WZA0 190 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 DPH3Q96FX2 82 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 TMEM141Q96I45 108 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 BET1LQ9NYM9 111 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 SPHKAPQ2M3C7 1700 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 CUL7Q14999 1698 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 ROBO1Q9Y6N7 1651 aa0.18□□□□□ -2.38
CD44-215ENST00000525241 PAPPAQ13219 1627 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 COL14A1Q05707 1796 aaKnown RBP0.17□□□□□ -2.38
CD44-215ENST00000525241 TCRBV3S1A0A5B6 114 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 COX4I1P13073 169 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 DAPK1P53355 1430 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 ARPC4P59998 168 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 C9orf116Q5BN46 136 aaPredicted RBP0.17□□□□□ -2.38
CD44-215ENST00000525241 SPANXN1Q5VSR9 72 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 C20orf197Q8N268 126 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 DSCR8Q96T75 97 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 TMEM191AQ9H0A3 160 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 PAIP2BQ9ULR5 123 aaKnown RBP0.17□□□□□ -2.38
CD44-215ENST00000525241 MAP3K1Q13233 1512 aa0.17□□□□□ -2.38
CD44-215ENST00000525241 IBTKQ9P2D0 1353 aaPredicted RBP0.17□□□□□ -2.38
CD44-215ENST00000525241 GOLGA3Q08378 1498 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 RGPD1P0DJD0 1748 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 PEG3Q9GZU2 1588 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 UGGT1Q9NYU2 1555 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 LCE6AA0A183 80 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 MCRIP1C9JLW8 97 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 J3QR89 54 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 K7ERU9 68 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 APOC1P02654 83 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 COPZ1P61923 177 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 CYP2G1PQ6ZSU1 146 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 COX7B2Q8TF08 81 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 TCEAL4Q96EI5 215 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 PROK2Q9HC23 129 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 SHPRHQ149N8 1683 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 DNAH17Q9UFH2 4485 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 CFTRP13569 1480 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 LRRC37A2A6NM11 1700 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 ARAP2Q8WZ64 1704 aa0.16□□□□□ -2.38
CD44-215ENST00000525241 TNRC6CQ9HCJ0 1690 aaKnown RBP0.15□□□□□ -2.39
CD44-215ENST00000525241 FLGP20930 4061 aaPredicted RBP0.15□□□□□ -2.39
CD44-215ENST00000525241 RBAKDNA6NC62 111 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 K7EP13 123 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 HMGN1P05114 100 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 SSBP1Q04837 148 aaKnown RBP0.15□□□□□ -2.39
CD44-215ENST00000525241 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 PFDN5Q99471 154 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 TMEM242Q9NWH2 141 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 COA4Q9NYJ1 87 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 ZNF518AQ6AHZ1 1483 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 IFT140Q96RY7 1462 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 TSC2P49815 1807 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 WNK3Q9BYP7 1800 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 ZNF236Q9UL36 1845 aa0.15□□□□□ -2.39
CD44-215ENST00000525241 DNAH2Q9P225 4427 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 EPRSP07814 1512 aaKnown RBP0.14□□□□□ -2.39
CD44-215ENST00000525241 ASXL1Q8IXJ9 1541 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 GUCA1AP43080 201 aaPredicted RBP0.14□□□□□ -2.39
CD44-215ENST00000525241 RRAS2P62070 204 aaPredicted RBP0.14□□□□□ -2.39
CD44-215ENST00000525241 UBE2G1P62253 170 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 LSM10Q969L4 123 aaKnown RBP0.14□□□□□ -2.39
CD44-215ENST00000525241 LINC00470Q9BZP3 86 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 BPESC1Q9GZL8 116 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 PSME4Q14997 1843 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 TCHHQ07283 1943 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 TTC37Q6PGP7 1564 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 KIF21AQ7Z4S6 1674 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 KDM3BQ7LBC6 1761 aa0.14□□□□□ -2.39
CD44-215ENST00000525241 ABCC5O15440 1437 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 PPIP5K1Q6PFW1 1433 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 CASKIN1Q8WXD9 1431 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 VPS13DQ5THJ4 4388 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 VMO1Q7Z5L0 202 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 C4orf33Q8N1A6 199 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 PPP1R1CQ8WVI7 109 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 ZNF831Q5JPB2 1677 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 KDM5DQ9BY66 1539 aa0.13□□□□□ -2.39
CD44-215ENST00000525241 DNMBPQ6XZF7 1577 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 DNAH11Q96DT5 4516 aa0.12□□□□□ -2.39
CD44-215ENST00000525241 TEX14Q8IWB6 1497 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms