RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 XRN1Q8IZH2 1706 aaKnown RBP-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 PKHD1P08F94 4074 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 SPTBN1Q01082 2364 aaKnown RBP-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 LAMA5O15230 3695 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 TOPAZ1Q8N9V7 1692 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 PRKDCP78527 4128 aaKnown RBP-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 NBEAL1Q6ZS30 2694 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 SETXQ7Z333 2677 aaKnown RBP-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 KNDC1Q76NI1 1749 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 SCN11AQ9UI33 1791 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 SSSCA1O60232 199 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 AKAIN1P0CW23 69 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 COMMD6Q7Z4G1 85 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 C5orf38Q86SI9 138 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 WNK1Q9H4A3 2382 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 GVINP1Q7Z2Y8 2422 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 MAP1BP46821 2468 aaKnown RBP-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 IQSEC2Q5JU85 1478 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 NLRP1Q9C000 1473 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 SHANK2Q9UPX8 1470 aa-0.23□□□□□ -2.45
HMGB1P28-201ENST00000507778 C4AP0C0L4 1744 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 C4BP0C0L5 1744 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 PIEZO2Q9H5I5 2752 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 IGLC7A0M8Q6 106 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 I3L2K1 104 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 HMGN4O00479 90 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 SPRR2BP35325 72 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 DCDP81605 110 aaKnown RBP-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 KRTAP20-2Q3LI61 65 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 APC2O95996 2303 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 CREBBPQ92793 2442 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 WDR7Q9Y4E6 1490 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 FLNBO75369 2602 aaKnown RBP-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 ZFHX3Q15911 3703 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 C5P01031 1676 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 NF1P21359 2839 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 RGPD3A6NKT7 1758 aaPredicted RBP-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 BCORQ6W2J9 1755 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 RGPD4Q7Z3J3 1758 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 KIF20BQ96Q89 1820 aa-0.24□□□□□ -2.45
HMGB1P28-201ENST00000507778 PI4KAP42356 2102 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 LOC285095A0A1B0GVY8 99 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 KRTAP6-2Q3LI66 62 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 LINC01558Q9Y6Z2 57 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 KTN1Q86UP2 1357 aaKnown RBP-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 CUX1P39880 1505 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 TARBP1Q13395 1621 aaKnown RBP-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 NALCNQ8IZF0 1738 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 KIAA1551Q9HCM1 1747 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 ACANP16112 2415 aa-0.25□□□□□ -2.45
HMGB1P28-201ENST00000507778 STAB2Q8WWQ8 2551 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 SETD2Q9BYW2 2564 aaPredicted RBP-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 EP300Q09472 2414 aaPredicted RBP-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 PKD1L3Q7Z443 1732 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 COL4A6Q14031 1691 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 RAPGEF6Q8TEU7 1601 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 HERC2O95714 4834 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 NSD3Q9BZ95 1437 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 ROCK2O75116 1388 aaKnown RBP-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 TRBV6-1A0A0K0K1D8 114 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 SPRR1BP22528 89 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 LCN9Q8WX39 176 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 PP6455Q8WZ26 134 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 STARD9Q9P2P6 4700 aa-0.26□□□□□ -2.45
HMGB1P28-201ENST00000507778 A0A0G2JMZ2 1700 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 SHPRHQ149N8 1683 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 SPTBN4Q9H254 2564 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 TULP4Q9NRJ4 1543 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 A2ML1A8K2U0 1454 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 GAPVD1Q14C86 1478 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 HERC1Q15751 4861 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 OOSP1A8MZH6 123 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 M0R2T5 61 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 PIGYQ3MUY2 71 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 MRPL54Q6P161 138 aaKnown RBP-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 SFTA2Q6UW10 78 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 DEFB105AQ8NG35 78 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 MYOZ3Q8TDC0 251 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 CRIPTQ9P021 101 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 FAT3Q8TDW7 4589 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 ATRQ13535 2644 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 DOPEY1Q5JWR5 2465 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 RNF213Q63HN8 5207 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 SPTA1P02549 2419 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 QSER1Q2KHR3 1735 aa-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 SUPT6HQ7KZ85 1726 aaKnown RBP-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 CNOT1A5YKK6 2376 aaKnown RBP-0.27□□□□□ -2.45
HMGB1P28-201ENST00000507778 TGP01266 2768 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 EHBP1L1Q8N3D4 1523 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 RYR3Q15413 4870 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 LINC00959A0A1B0GUT2 108 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 SFT2D2O95562 160 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 TNFP01375 233 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 COX6B1P14854 86 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 RPL13AP3Q6NVV1 102 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 APLNQ9ULZ1 77 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 DNAJC13O75165 2243 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 SPHKAPQ2M3C7 1700 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 UBR1Q8IWV7 1749 aa-0.28□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms