RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 COX7B2Q8TF08 81 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 CMC2Q9NRP2 79 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 LINC01558Q9Y6Z2 57 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 ADGRB2O60241 1585 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 TRPM2O94759 1503 aa2.73□□□□□ -1.97
CCDC88A-210ENST00000468534 COL11A1P12107 1806 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 DOCK11Q5JSL3 2073 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 IGKV3D-7A0A0C4DH55 119 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 IGKV3OR2-268A0A0C4DH90 116 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 TRBV30A0A0K0K1B3 111 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 PPYP01298 95 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 IFI6P09912 130 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 PDE6GP18545 87 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 CCL18P55774 89 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 LY6EQ16553 131 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 SDK2Q58EX2 2172 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 CCL26Q9Y258 94 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 R4GMQ9 66 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 TSC2P49815 1807 aa2.72□□□□□ -1.97
CCDC88A-210ENST00000468534 PHRF1Q9P1Y6 1649 aaKnown RBP2.71□□□□□ -1.97
CCDC88A-210ENST00000468534 ERCC6L2Q5T890 1561 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 SIP14410 1827 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 M0R135 149 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 M0R3E3 92 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 IGLV3-1P01715 115 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 NUP214P35658 2090 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 DOCK9Q9BZ29 2069 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 MYOFQ9NZM1 2061 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 TJP1Q07157 1748 aa2.71□□□□□ -1.98
CCDC88A-210ENST00000468534 HRES1P13985 223 aa2.7□□□□□ -1.98
CCDC88A-210ENST00000468534 COL27A1Q8IZC6 1860 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-210ENST00000468534 POLR1AO95602 1720 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-210ENST00000468534 MPDZO75970 2070 aa2.7□□□□□ -1.98
CCDC88A-210ENST00000468534 CUL9Q8IWT3 2517 aa2.7□□□□□ -1.98
CCDC88A-210ENST00000468534 COL4A5P29400 1685 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 ADCY10Q96PN6 1610 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 A0A1B0GUT8 65 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 TRBV6-4A0A1B0GX49 114 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 LRCOL1A6NCL2 159 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 DEFB132Q7Z7B7 95 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 LINC00846Q9NV44 126 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 TUBGCP6Q96RT7 1819 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 ZNF236Q9UL36 1845 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 SHPRHQ149N8 1683 aa2.69□□□□□ -1.98
CCDC88A-210ENST00000468534 NHSL1Q5SYE7 1610 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 NRXN2Q9P2S2 1712 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 TPRXLQ17RH7 258 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 HCP5Q6MZN7 132 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 SCN7AQ01118 1682 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 GBF1Q92538 1859 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 HEATR5BQ9P2D3 2071 aa2.68□□□□□ -1.98
CCDC88A-210ENST00000468534 A0A0G2JQZ4 141 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 JMJD7-PLA2G4BH0Y9G9 81 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 UQCR11O14957 56 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 DNAL4O96015 105 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 ZNF137PP52743 207 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 SPRR4Q96PI1 79 aa2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 EIF2AK4Q9P2K8 1649 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-210ENST00000468534 COL4A1P02462 1669 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 RICTORQ6R327 1708 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 PARP4Q9UKK3 1724 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 TRAV40A0A0B4J280 105 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 SPACA4Q8TDM5 124 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 ABRACLQ9P1F3 81 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 C3P01024 1663 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 SAMD9Q5K651 1589 aa2.66□□□□□ -1.98
CCDC88A-210ENST00000468534 PKD1L3Q7Z443 1732 aa2.65□□□□□ -1.98
CCDC88A-210ENST00000468534 A0A087WTM6 91 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 NBDYA0A0U1RRE5 68 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 A0A1W2PNN7 141 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 NDUFB1O75438 58 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 MGPP08493 103 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 FCER1GP30273 86 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 NREPQ16612 68 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 WFDC6Q9BQY6 131 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 V9GYV3 84 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 RREB1Q92766 1687 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 NINQ8N4C6 2090 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 KIAA0100Q14667 2235 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 ZGRF1Q86YA3 2104 aa2.65□□□□□ -1.99
CCDC88A-210ENST00000468534 LCE6AA0A183 80 aa2.64□□□□□ -1.99
CCDC88A-210ENST00000468534 SPINK7P58062 85 aa2.64□□□□□ -1.99
CCDC88A-210ENST00000468534 SPATA8Q6RVD6 105 aa2.64□□□□□ -1.99
CCDC88A-210ENST00000468534 TXNDC17Q9BRA2 123 aa2.64□□□□□ -1.99
CCDC88A-210ENST00000468534 UBR3Q6ZT12 1888 aa2.64□□□□□ -1.99
CCDC88A-210ENST00000468534 ZNF831Q5JPB2 1677 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 CR1P17927 2039 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 TIAM2Q8IVF5 1701 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 IGKV2-40A0A087WW87 121 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 TRAV21A0A0B4J279 112 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 CTXND1A0A1B0GTU2 59 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 H0Y9P7 68 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 J3QRE1 110 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 IGKV2D-40P01614 121 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 DEFB134Q4QY38 66 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 TMEM263Q8WUH6 116 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 LINC00208Q96KT6 92 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 WFDC10AQ9H1F0 79 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 KLK9Q9UKQ9 250 aa2.63□□□□□ -1.99
CCDC88A-210ENST00000468534 IGLV3-19P01714 112 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms