RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 REG3AQ06141 175 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 AMMECR1LQ6DCA0 310 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 ORMDL3Q8N138 153 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 LINC00269Q8N2A0 174 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 KIAA1109Q2LD37 5005 aa7.87□□□□□ -1.15
VPS52-213ENST00000461743 SYS1-DBNDD2H3BUS1 97 aa7.86□□□□□ -1.15
VPS52-213ENST00000461743 TNFRSF6BO95407 300 aa7.86□□□□□ -1.15
VPS52-213ENST00000461743 FCER1GP30273 86 aa7.86□□□□□ -1.15
VPS52-213ENST00000461743 C14orf177Q52M58 125 aa7.86□□□□□ -1.15
VPS52-213ENST00000461743 SMIM2Q9BVW6 85 aa7.86□□□□□ -1.15
VPS52-213ENST00000461743 HERC2O95714 4834 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 IGLV4-60A0A075B6I1 120 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 TMEM238C9JI98 176 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 CDK2AP2O75956 126 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 FGF6P10767 208 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 GTF2H5Q6ZYL4 71 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 TMEM101Q96IK0 257 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 HSPB8Q9UJY1 196 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 RYR1P21817 5038 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 HSPG2P98160 4391 aa7.85□□□□□ -1.15
VPS52-213ENST00000461743 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.84□□□□□ -1.15
VPS52-213ENST00000461743 IGKV2-29A2NJV5 120 aaPredicted RBP7.84□□□□□ -1.15
VPS52-213ENST00000461743 CLPSL2Q6UWE3 100 aa7.84□□□□□ -1.15
VPS52-213ENST00000461743 URB1-AS1Q96HZ7 61 aa7.84□□□□□ -1.15
VPS52-213ENST00000461743 PRELID3AQ96N28 172 aa7.84□□□□□ -1.15
VPS52-213ENST00000461743 MAP1LC3CQ9BXW4 147 aa7.84□□□□□ -1.15
VPS52-213ENST00000461743 DNAH8Q96JB1 4490 aa7.84□□□□□ -1.16
VPS52-213ENST00000461743 IGLV5-52A0A0A0MRZ9 124 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 LEPROTL1O95214 131 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 NPYP01303 97 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 COX8AP10176 69 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 MAPKAPK5-AS1Q8N8E1 139 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 OR5A1Q8NGJ0 315 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 DEFB104AQ8WTQ1 72 aa7.83□□□□□ -1.16
VPS52-213ENST00000461743 CSDC2Q9Y534 153 aaKnown RBP7.83□□□□□ -1.16
VPS52-213ENST00000461743 PRSS47A8MTI9 375 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 H3BRM9 83 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 SCGB1A1P11684 91 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 WFDC2Q14508 124 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 LINC01545Q5VT33 79 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 KRTAP26-1Q6PEX3 210 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 BAALCQ8WXS3 180 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 TIMM21Q9BVV7 248 aa7.82□□□□□ -1.16
VPS52-213ENST00000461743 A6NDN8 102 aa7.81□□□□□ -1.16
VPS52-213ENST00000461743 K7EMI3 77 aa7.81□□□□□ -1.16
VPS52-213ENST00000461743 K7EP34 96 aa7.81□□□□□ -1.16
VPS52-213ENST00000461743 GCSHP23434 173 aa7.81□□□□□ -1.16
VPS52-213ENST00000461743 MAP1LC3AQ9H492 121 aa7.81□□□□□ -1.16
VPS52-213ENST00000461743 hDV102S1A0JD36 115 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 GAGE10A6NGK3 116 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 C9orf118A6NHY6 69 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 C2orf91Q6ZV80 131 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 SVIPQ8NHG7 77 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 CDC42SE2Q9NRR3 84 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 UBE2D4Q9Y2X8 147 aa7.8□□□□□ -1.16
VPS52-213ENST00000461743 IGLV10-54A0A075B6I4 117 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 USP17L23D6RBM5 183 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 LECT2O14960 151 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 HSD52Q0P140 79 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 DGAT2L7PQ6IED9 249 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 SPANXA1Q9NS26 97 aa7.79□□□□□ -1.16
VPS52-213ENST00000461743 LINC00173Q6ZV60 143 aa7.78□□□□□ -1.16
VPS52-213ENST00000461743 ERASQ7Z444 233 aa7.78□□□□□ -1.16
VPS52-213ENST00000461743 Q8N8P6 123 aa7.78□□□□□ -1.16
VPS52-213ENST00000461743 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.77□□□□□ -1.17
VPS52-213ENST00000461743 ORMDL2Q53FV1 153 aa7.77□□□□□ -1.17
VPS52-213ENST00000461743 CHCHD10Q8WYQ3 142 aaPredicted RBP7.77□□□□□ -1.17
VPS52-213ENST00000461743 NXT2Q9NPJ8 142 aaKnown RBP7.77□□□□□ -1.17
VPS52-213ENST00000461743 IGKV3OR2-268A0A0C4DH90 116 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 LINC00959A0A1B0GUT2 108 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 KRTAP10-1P60331 282 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 MRPS36P82909 103 aaKnown RBP7.76□□□□□ -1.17
VPS52-213ENST00000461743 SS18Q15532 418 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 CFAP161Q6P656 301 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 TP73-AS1Q9UF72 201 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 PYGO1Q9Y3Y4 419 aa7.76□□□□□ -1.17
VPS52-213ENST00000461743 GAGE12HA6NDE8 117 aa7.75□□□□□ -1.17
VPS52-213ENST00000461743 FUSP35637 526 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS52-213ENST00000461743 IFI27P40305 119 aaPredicted RBP7.75□□□□□ -1.17
VPS52-213ENST00000461743 Q6ZUT4 128 aa7.75□□□□□ -1.17
VPS52-213ENST00000461743 PRSS1P07477 247 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 CNBPP62633 177 aaKnown RBP7.74□□□□□ -1.17
VPS52-213ENST00000461743 RPL39P62891 51 aaKnown RBP7.74□□□□□ -1.17
VPS52-213ENST00000461743 FOXI1Q12951 378 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 CD164L2Q6UWJ8 174 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 Q6ZSA8 131 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 FA2HQ7L5A8 372 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 BOD1L2Q8IYS8 172 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 AP5S1Q9NUS5 200 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 CYSLTR1Q9Y271 337 aa7.74□□□□□ -1.17
VPS52-213ENST00000461743 LOC389332A0A1B0GUA5 103 aa7.73□□□□□ -1.17
VPS52-213ENST00000461743 A0A1W2PPM0 123 aa7.73□□□□□ -1.17
VPS52-213ENST00000461743 LINC01549A6NIU2 74 aa7.73□□□□□ -1.17
VPS52-213ENST00000461743 C15orf56Q8N910 161 aa7.73□□□□□ -1.17
VPS52-213ENST00000461743 GVQW2A0A096LPI5 108 aaPredicted RBP7.72□□□□□ -1.17
VPS52-213ENST00000461743 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.72□□□□□ -1.17
VPS52-213ENST00000461743 TMEM238LA0A1B0GVL6 79 aa7.72□□□□□ -1.17
VPS52-213ENST00000461743 H3BUT2 72 aa7.72□□□□□ -1.17
VPS52-213ENST00000461743 XCL1P47992 114 aa7.72□□□□□ -1.17
VPS52-213ENST00000461743 SPCS1Q9Y6A9 102 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms