RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KAAG1Q9UBP8 84 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 CDKN2A-AS1Q9UH64 79 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 X6R8D5 127 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 DEFB131AP59861 70 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 PRAC1Q96KF2 57 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 WT1P19544 449 aaPredicted RBP2.5□□□□□ -2.01
SYNE1-212ENST00000423061 Q6ZTI0 123 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 IGLV11-55A0A075B6I3 123 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 LINC01547P58512 204 aaPredicted RBP2.49□□□□□ -2.01
SYNE1-212ENST00000423061 BRD3OSQ6XYD6 125 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 DNAJC9-AS1A6NH13 148 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 B4DSR2 109 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 SMAD5-AS1Q9Y6J3 95 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 PRR9Q5T870 116 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 NDUFS5O43920 106 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 NDUFA1O15239 70 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 C20orf203Q8NBC4 194 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 G3V318 75 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 PRYO14603 147 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 C9orf47Q6ZRZ4 202 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 NPBQ8NG41 125 aa2.49□□□□□ -2.01
SYNE1-212ENST00000423061 MP68P56378 58 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 ZNF706Q9Y5V0 76 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-212ENST00000423061 E7EQL1 145 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 ZNF73O43830 326 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-212ENST00000423061 PROK1P58294 105 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 C16orf95Q9H693 158 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 FAM19A3Q7Z5A8 133 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 FAM215AQ9Y5M1 114 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 HCG22E2RYF7 251 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 HIGD2AQ9BW72 106 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 FAM229BQ4G0N7 80 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 IGLV4-3A0A075B6K6 122 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 PRR15Q8IV56 129 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 MSMBP08118 114 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 ZNF843Q8N446 348 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 PCSK5Q92824 1860 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 CTSGP08311 255 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 PDE6GP18545 87 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 A0A0J9YWU9 116 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 M0QY20 66 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 COX6A2Q02221 97 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 C16orf74Q96GX8 76 aa2.48□□□□□ -2.01
SYNE1-212ENST00000423061 TRAV22A0A0B4J277 110 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 LINC00574Q9H8X3 128 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 TRBV6-5A0A0K0K1A5 114 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 DEFB130BP0DP73 79 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 DEFB130AP0DP74 79 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 M0R378 163 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 A0A0J9YX75 114 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 SEC61BP60468 96 aaKnown RBP2.47□□□□□ -2.01
SYNE1-212ENST00000423061 CLPSL2Q6UWE3 100 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 BBC3Q96PG8 261 aaPredicted RBP2.47□□□□□ -2.01
SYNE1-212ENST00000423061 IGHV4-30-2A0A087WSY4 118 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 REG3AQ06141 175 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 ACANP16112 2415 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 UNQ9165/PRO28630Q6UXU0 137 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 C9orf129Q5T035 196 aaKnown RBP2.47□□□□□ -2.01
SYNE1-212ENST00000423061 PRSS33Q8NF86 280 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 TM2D3Q9BRN9 247 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 DIRC1Q969H9 104 aa2.47□□□□□ -2.01
SYNE1-212ENST00000423061 IGHV4OR15-8A0A075B7B6 117 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 A0A087WW49 117 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00467Q9BRT7 94 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 MUC4Q99102 2169 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 Q8N3U1 123 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 JMJD7-PLA2G4BH0Y9G9 81 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 CXCL6P80162 114 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 BCE1O60756 84 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 C8orf87E5RJ46 101 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 COL4A2P08572 1712 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 A0A087X002 238 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 KTN1-AS1Q86SY8 53 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 C1orf158Q8N1D5 194 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 CENPEQ02224 2701 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 ZFAND2AQ8N6M9 145 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 IGHV7-81A0A0B4J1V7 117 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00588Q9Y4M8 146 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 LINC01356Q8N9X3 169 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 CCL18P55774 89 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 A8MTW9 85 aa2.46□□□□□ -2.02
SYNE1-212ENST00000423061 PRM2P04554 102 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 LCA10Q71F78 164 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 C7orf65Q6ZTY9 151 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 ANGP03950 147 aaKnown RBP2.45□□□□□ -2.02
SYNE1-212ENST00000423061 ETDCA0A1B0GVM5 59 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 WISP2O76076 250 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 Q6ZVQ6 151 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 CGB3P0DN86 165 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 CGB7P0DN87 165 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00337Q8N6G1 96 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 C19orf84I3L1E1 186 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 C5orf56Q8N8D9 126 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 POLR2KP53803 58 aaKnown RBP2.45□□□□□ -2.02
SYNE1-212ENST00000423061 CNFNQ9BYD5 112 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 MSMPQ1L6U9 139 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 C11orf72Q8NBR9 251 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 POLQO75417 2590 aa2.45□□□□□ -2.02
SYNE1-212ENST00000423061 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.45□□□□□ -2.02
SYNE1-212ENST00000423061 UBE2DNLQ8IWF7 75 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms