RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KRTAP17-1Q9BYP8 105 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 VCX2Q9H322 139 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 PCLOQ9Y6V0 5065 aa4.11□□□□□ -1.75
USP54-202ENST00000413442 A0A087WZ39 114 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 TRAV13-1A0A0B4J241 112 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 IGHV3OR16-9A0A0B4J2B5 98 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 LOC107984640A0A0U1RRK4 108 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 LINC01546A6NGU7 62 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 SMR3BP02814 79 aaPredicted RBP4.1□□□□□ -1.75
USP54-202ENST00000413442 SLPIP03973 132 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 FUSP35637 526 aaKnown RBP eCLIP4.1□□□□□ -1.75
USP54-202ENST00000413442 RAB5BP61020 215 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 C2orf66Q6UXQ4 117 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 LINC00528Q8N1L1 170 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 KRTAP4-5Q9BYR2 181 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 RPS10P5Q9NQ39 176 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 PLAC8Q9NZF1 115 aa4.1□□□□□ -1.75
USP54-202ENST00000413442 IGIPA6NJ69 53 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 OXTP01178 125 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 ADCYAP1P18509 176 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 RPL39P62891 51 aaKnown RBP4.09□□□□□ -1.75
USP54-202ENST00000413442 HERVK_113P63121 156 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 SPACA4Q8TDM5 124 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 C7orf33Q8WU49 177 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 TOMM6Q96B49 74 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 CARD19Q96LW7 228 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 AMELXQ99217 191 aa4.09□□□□□ -1.75
USP54-202ENST00000413442 ALKBH7Q9BT30 221 aaPredicted RBP4.09□□□□□ -1.75
USP54-202ENST00000413442 MRPL35Q9NZE8 188 aaKnown RBP4.09□□□□□ -1.75
USP54-202ENST00000413442 LRP1BQ9NZR2 4599 aa4.09□□□□□ -1.76
USP54-202ENST00000413442 IGLV4-3A0A075B6K6 122 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 A0A087WYN8 130 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 LOC389332A0A1B0GUA5 103 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 IFITM10A6NMD0 228 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 NDUFA1O15239 70 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 TLX1NBP0CAT3 122 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 COX6A2Q02221 97 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 FABP9Q0Z7S8 132 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 LINC01620Q4KN68 170 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 Q6ZUT4 128 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 CAMK2N2Q96S95 79 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 SMCO4Q9NRQ5 59 aa4.08□□□□□ -1.76
USP54-202ENST00000413442 TRBV30A0A0K0K1B3 111 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 KRTAP29-1A8MX34 341 aaPredicted RBP4.07□□□□□ -1.76
USP54-202ENST00000413442 APOC3P02656 99 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 LINC00614P0C842 121 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 UBE2D1P51668 147 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 RPL37AP61513 92 aaKnown RBP4.07□□□□□ -1.76
USP54-202ENST00000413442 HIGD2BQ4VC39 106 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 LINC00242Q5T6M2 205 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 Q6ZRU5 148 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 C5orf38Q86SI9 138 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 FAM104AQ969W3 186 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 MRPL18Q9H0U6 180 aaKnown RBP4.07□□□□□ -1.76
USP54-202ENST00000413442 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.07□□□□□ -1.76
USP54-202ENST00000413442 HSPG2P98160 4391 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 DNAH5Q8TE73 4624 aa4.07□□□□□ -1.76
USP54-202ENST00000413442 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.06□□□□□ -1.76
USP54-202ENST00000413442 CXCL5P42830 114 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 PTTG1IPP53801 180 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 MAJINQ3KP22 176 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 FA2HQ7L5A8 372 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 STPG4Q8N801 248 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 PACRGQ96M98 296 aaPredicted RBP4.06□□□□□ -1.76
USP54-202ENST00000413442 SCGB3A1Q96QR1 104 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 GEMIN7Q9H840 131 aaKnown RBP4.06□□□□□ -1.76
USP54-202ENST00000413442 TRAPPC1Q9Y5R8 145 aa4.06□□□□□ -1.76
USP54-202ENST00000413442 TINCRA0A1B0GVN0 87 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 ATP5LO75964 103 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 PRSS2P07478 247 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 SPAG11BQ08648 103 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 PMVKQ15126 192 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 C6orf226Q5I0X4 101 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 SFTA2Q6UW10 78 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 Q8IZM0 81 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 ORAOV1Q8WV07 137 aa4.05□□□□□ -1.76
USP54-202ENST00000413442 APOBP04114 4563 aaKnown RBP4.05□□□□□ -1.76
USP54-202ENST00000413442 H3BRM9 83 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 KRTAP10-4P60372 401 aaPredicted RBP4.04□□□□□ -1.76
USP54-202ENST00000413442 CKS1BP61024 79 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 KIAA0087Q14695 138 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 KIAA1644Q3SXP7 199 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 PDZD11Q5EBL8 140 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 RNASE13Q5GAN3 156 aaKnown RBP4.04□□□□□ -1.76
USP54-202ENST00000413442 Q6ZRP5 223 aa4.04□□□□□ -1.76
USP54-202ENST00000413442 CHCHD1Q96BP2 118 aaKnown RBP4.04□□□□□ -1.76
USP54-202ENST00000413442 OPRPNQ99935 248 aaPredicted RBP4.04□□□□□ -1.76
USP54-202ENST00000413442 SRRM2Q9UQ35 2752 aaKnown RBP4.04□□□□□ -1.76
USP54-202ENST00000413442 VPS13BQ7Z7G8 4022 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 IGLV5-45A0A087WSX0 123 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 A0A096LNI7 61 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 IGKV2-24A0A0C4DH68 120 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 NDUFC2-KCTD14E9PQ53 114 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 SERTAD4-AS1Q5TG53 156 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 SPINK6Q6UWN8 80 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 LINC00173Q6ZV60 143 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 CST9LQ9H4G1 147 aa4.03□□□□□ -1.76
USP54-202ENST00000413442 F8VRH5 84 aa4.02□□□□□ -1.77
USP54-202ENST00000413442 PANO1I0J062 215 aa4.02□□□□□ -1.77
USP54-202ENST00000413442 HBDP02042 147 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms