RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 K7EQD1 137 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 CCL24O00175 119 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 HERVK_113P63121 156 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 IL17DQ8TAD2 202 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 COX7A2LO14548 114 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 WFDC11Q8NEX6 87 aa14.69□□□□□ -0.06
CLK3-202ENST00000395066 TRBV7-7A0A0K0K1E9 115 aa14.68□□□□□ -0.06
CLK3-202ENST00000395066 SMIM1B2RUZ4 78 aa14.68□□□□□ -0.06
CLK3-202ENST00000395066 SOSTDC1Q6X4U4 206 aa14.68□□□□□ -0.06
CLK3-202ENST00000395066 RPL36AP83881 106 aaKnown RBP14.68□□□□□ -0.06
CLK3-202ENST00000395066 ZNF843Q8N446 348 aa14.68□□□□□ -0.06
CLK3-202ENST00000395066 RPL36ALQ969Q0 106 aaKnown RBP14.68□□□□□ -0.06
CLK3-202ENST00000395066 HIST2H2BCQ6DN03 193 aa14.67□□□□□ -0.06
CLK3-202ENST00000395066 RPL35AP18077 110 aaKnown RBP14.65□□□□□ -0.06
CLK3-202ENST00000395066 SHISA2Q6UWI4 295 aa14.65□□□□□ -0.06
CLK3-202ENST00000395066 COPS9Q8WXC6 57 aa14.65□□□□□ -0.06
CLK3-202ENST00000395066 CHCHD5Q9BSY4 110 aa14.65□□□□□ -0.06
CLK3-202ENST00000395066 ACYP1P07311 99 aa14.65□□□□□ -0.06
CLK3-202ENST00000395066 PRIMA1Q86XR5 153 aa14.65□□□□□ -0.06
CLK3-202ENST00000395066 IGKV3OR2-268A0A0C4DH90 116 aa14.64□□□□□ -0.07
CLK3-202ENST00000395066 GIG44P09565 113 aaPredicted RBP14.64□□□□□ -0.07
CLK3-202ENST00000395066 MEIG1Q5JSS6 88 aa14.64□□□□□ -0.07
CLK3-202ENST00000395066 CDC42SE2Q9NRR3 84 aa14.63□□□□□ -0.07
CLK3-202ENST00000395066 FN1P02751 2386 aaKnown RBP14.62□□□□□ -0.07
CLK3-202ENST00000395066 FAM19A3Q7Z5A8 133 aa14.62□□□□□ -0.07
CLK3-202ENST00000395066 F5H768 121 aa14.62□□□□□ -0.07
CLK3-202ENST00000395066 TRGV2A0A075B6R0 118 aa14.61□□□□□ -0.07
CLK3-202ENST00000395066 DAZ2Q13117 558 aaKnown RBP14.61□□□□□ -0.07
CLK3-202ENST00000395066 DAZ4Q86SG3 579 aaKnown RBP14.61□□□□□ -0.07
CLK3-202ENST00000395066 DAZ3Q9NR90 486 aaKnown RBP14.61□□□□□ -0.07
CLK3-202ENST00000395066 TRAV25A0A0B4J276 109 aa14.6□□□□□ -0.07
CLK3-202ENST00000395066 PLAC8L1A1L4L8 177 aa14.6□□□□□ -0.07
CLK3-202ENST00000395066 TRACP01848 142 aa14.6□□□□□ -0.07
CLK3-202ENST00000395066 TRBV10-1A0A0K0K1A3 114 aa14.59□□□□□ -0.07
CLK3-202ENST00000395066 LRRC75A-AS1Q8N1F1 130 aa14.59□□□□□ -0.07
CLK3-202ENST00000395066 IMUPQ9GZP8 106 aa14.59□□□□□ -0.07
CLK3-202ENST00000395066 TENM4Q6N022 2769 aa14.59□□□□□ -0.07
CLK3-202ENST00000395066 UBE2L6O14933 153 aa14.59□□□□□ -0.07
CLK3-202ENST00000395066 CSDC2Q9Y534 153 aaKnown RBP14.59□□□□□ -0.07
CLK3-202ENST00000395066 SMCR5Q8TEV8 140 aa14.58□□□□□ -0.08
CLK3-202ENST00000395066 FAM236AA0A1B0GUQ0 79 aa14.58□□□□□ -0.08
CLK3-202ENST00000395066 FAM236BA0A1B0GV22 79 aa14.58□□□□□ -0.08
CLK3-202ENST00000395066 BAALC-AS2P0C853 105 aa14.58□□□□□ -0.08
CLK3-202ENST00000395066 HERV-K104P63124 156 aa14.57□□□□□ -0.08
CLK3-202ENST00000395066 SMIM20Q8N5G0 67 aa14.57□□□□□ -0.08
CLK3-202ENST00000395066 TMEM243Q9BU79 118 aa14.57□□□□□ -0.08
CLK3-202ENST00000395066 TOMM7Q9P0U1 55 aa14.56□□□□□ -0.08
CLK3-202ENST00000395066 NBEAL2Q6ZNJ1 2754 aa14.56□□□□□ -0.08
CLK3-202ENST00000395066 LINC00643Q86TS7 51 aa14.56□□□□□ -0.08
CLK3-202ENST00000395066 FAM218AQ96MZ4 157 aa14.56□□□□□ -0.08
CLK3-202ENST00000395066 TMEM86BQ8N661 226 aa14.55□□□□□ -0.08
CLK3-202ENST00000395066 GCN1Q92616 2671 aaKnown RBP14.55□□□□□ -0.08
CLK3-202ENST00000395066 LINC01006Q8NI28 216 aa14.54□□□□□ -0.08
CLK3-202ENST00000395066 C22orf24Q9Y442 160 aa14.54□□□□□ -0.08
CLK3-202ENST00000395066 IGLV4-60A0A075B6I1 120 aa14.53□□□□□ -0.08
CLK3-202ENST00000395066 FAM110AQ9BQ89 295 aa14.53□□□□□ -0.08
CLK3-202ENST00000395066 ITPR2Q14571 2701 aa14.53□□□□□ -0.08
CLK3-202ENST00000395066 TRGV4A0A0C4DH28 118 aa14.52□□□□□ -0.08
CLK3-202ENST00000395066 PPDPFQ9H3Y8 114 aa14.52□□□□□ -0.09
CLK3-202ENST00000395066 ANK3Q12955 4377 aaKnown RBP14.51□□□□□ -0.09
CLK3-202ENST00000395066 FAM222AQ5U5X8 452 aa14.51□□□□□ -0.09
CLK3-202ENST00000395066 SDIM1Q6ZPB5 146 aa14.51□□□□□ -0.09
CLK3-202ENST00000395066 C3orf56Q8N813 242 aa14.51□□□□□ -0.09
CLK3-202ENST00000395066 C19orf73Q9NVV2 129 aa14.51□□□□□ -0.09
CLK3-202ENST00000395066 C16orf74Q96GX8 76 aa14.5□□□□□ -0.09
CLK3-202ENST00000395066 MIR7-3HGQ8N6C7 128 aa14.49□□□□□ -0.09
CLK3-202ENST00000395066 PDZD2O15018 2839 aa14.49□□□□□ -0.09
CLK3-202ENST00000395066 TRAV13-2A0A0B4J235 113 aa14.49□□□□□ -0.09
CLK3-202ENST00000395066 Q9HAA7 133 aa14.49□□□□□ -0.09
CLK3-202ENST00000395066 PF4P02776 101 aa14.48□□□□□ -0.09
CLK3-202ENST00000395066 INAFM2P0DMQ5 153 aa14.48□□□□□ -0.09
CLK3-202ENST00000395066 RPL28P46779 137 aaKnown RBP14.48□□□□□ -0.09
CLK3-202ENST00000395066 CSNK1G2-AS1Q8NCQ2 148 aa14.48□□□□□ -0.09
CLK3-202ENST00000395066 TMEM126AQ9H061 195 aa14.48□□□□□ -0.09
CLK3-202ENST00000395066 CRPP02741 224 aa14.48□□□□□ -0.09
CLK3-202ENST00000395066 COX7B2Q8TF08 81 aa14.47□□□□□ -0.09
CLK3-202ENST00000395066 DEFB130BP0DP73 79 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 DEFB130AP0DP74 79 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 MALP21145 153 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 GAGE2AQ6NT46 116 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 C11orf68Q9H3H3 251 aaKnown RBP14.46□□□□□ -0.09
CLK3-202ENST00000395066 IGLV1-51P01701 117 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 C5orf38Q86SI9 138 aa14.46□□□□□ -0.09
CLK3-202ENST00000395066 TRBV6-4A0A1B0GX49 114 aa14.45□□□□□ -0.1
CLK3-202ENST00000395066 FHL2Q14192 279 aa14.45□□□□□ -0.1
CLK3-202ENST00000395066 LINC00337Q8N6G1 96 aa14.45□□□□□ -0.1
CLK3-202ENST00000395066 KRTAP1-1Q07627 177 aa14.45□□□□□ -0.1
CLK3-202ENST00000395066 SND1-IT1Q9HBX3 110 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 IGKV2-28A0A075B6P5 120 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 TRBV6-8A0A0A6YYG3 113 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 IGKV2D-28P01615 120 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 CXCL5P42830 114 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 LINC00158P58513 81 aa14.44□□□□□ -0.1
CLK3-202ENST00000395066 PFN2P35080 140 aa14.43□□□□□ -0.1
CLK3-202ENST00000395066 C3orf22Q8N5N4 141 aa14.43□□□□□ -0.1
CLK3-202ENST00000395066 VWFP04275 2813 aa14.42□□□□□ -0.1
CLK3-202ENST00000395066 ATP5G1P05496 136 aa14.42□□□□□ -0.1
CLK3-202ENST00000395066 C9orf153Q5TBE3 101 aa14.42□□□□□ -0.1
CLK3-202ENST00000395066 OVOL2Q9BRP0 275 aa14.42□□□□□ -0.1
CLK3-202ENST00000395066 CLPSL2Q6UWE3 100 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms