RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 LEPROTO15243 131 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 TSHBP01222 138 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 GAGE5Q13069 117 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 GAGE6Q13070 117 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 RHOHQ15669 191 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 Q6Q795 121 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 DNAH9Q9NYC9 4486 aa10.33□□□□□ -0.76
CXCL12-201ENST00000343575 A0A0J9YWU9 116 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 TRBV27A0A0K0K1C4 114 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 SDHAF1A6NFY7 115 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 DAD1P61803 113 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 ATXN8Q156A1 80 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 TMEM170BQ5T4T1 132 aa10.32□□□□□ -0.76
CXCL12-201ENST00000343575 K7EQD1 137 aa10.31□□□□□ -0.76
CXCL12-201ENST00000343575 DEFB104AQ8WTQ1 72 aa10.31□□□□□ -0.76
CXCL12-201ENST00000343575 AMELXQ99217 191 aa10.31□□□□□ -0.76
CXCL12-201ENST00000343575 B9D2Q9BPU9 175 aa10.31□□□□□ -0.76
CXCL12-201ENST00000343575 LOC100131303A0A0U1RQF7 123 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 TRBV6-4A0A1B0GX49 114 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 IGHV3-33P01772 117 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 MEGF8Q7Z7M0 2845 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 TRGV4A0A0C4DH28 118 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 SNCGO76070 127 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 RPL13AP40429 203 aaKnown RBP10.3□□□□□ -0.76
CXCL12-201ENST00000343575 GAGE2BQ13066 116 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 MRPL23Q16540 153 aaKnown RBP10.3□□□□□ -0.76
CXCL12-201ENST00000343575 GAGE2EQ4V326 116 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 GAGE2DQ9UEU5 116 aa10.3□□□□□ -0.76
CXCL12-201ENST00000343575 COL7A1Q02388 2944 aa10.29□□□□□ -0.76
CXCL12-201ENST00000343575 PRKDCP78527 4128 aaKnown RBP10.29□□□□□ -0.76
CXCL12-201ENST00000343575 SFTA2Q6UW10 78 aa10.29□□□□□ -0.76
CXCL12-201ENST00000343575 TRBV10-1A0A0K0K1A3 114 aa10.28□□□□□ -0.76
CXCL12-201ENST00000343575 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
CXCL12-201ENST00000343575 C9JAW5 83 aa10.28□□□□□ -0.76
CXCL12-201ENST00000343575 TRBV30A0A0K0K1B3 111 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 A4D1N5 150 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 TSPEAR-AS2P59090 65 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 ZNRF2Q8NHG8 242 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 VSIG2Q96IQ7 327 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 DNAJC30Q96LL9 226 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 TNFRSF18Q9Y5U5 241 aa10.27□□□□□ -0.76
CXCL12-201ENST00000343575 ATP5G1P05496 136 aa10.27□□□□□ -0.77
CXCL12-201ENST00000343575 LINC00694P0DN24 101 aa10.27□□□□□ -0.77
CXCL12-201ENST00000343575 LINC01620Q4KN68 170 aa10.26□□□□□ -0.77
CXCL12-201ENST00000343575 TRBV10-2A0A0K0K1G8 114 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 GAGE12JA6NER3 117 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 NANOS2P60321 138 aaKnown RBP10.25□□□□□ -0.77
CXCL12-201ENST00000343575 GAGE4Q13068 117 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 Q6ZTC4 211 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 PRO0255Q9UI72 69 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 IGHV3-38A0A0C4DH36 116 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 I3L3M4 83 aa10.25□□□□□ -0.77
CXCL12-201ENST00000343575 NDUFV3P56181 108 aaKnown RBP10.24□□□□□ -0.77
CXCL12-201ENST00000343575 RPL39P62891 51 aaKnown RBP10.24□□□□□ -0.77
CXCL12-201ENST00000343575 RPL36AP83881 106 aaKnown RBP10.24□□□□□ -0.77
CXCL12-201ENST00000343575 TTC32Q5I0X7 151 aa10.24□□□□□ -0.77
CXCL12-201ENST00000343575 RPL36ALQ969Q0 106 aaKnown RBP10.24□□□□□ -0.77
CXCL12-201ENST00000343575 SPANXDQ9BXN6 97 aa10.24□□□□□ -0.77
CXCL12-201ENST00000343575 STAB2Q8WWQ8 2551 aa10.24□□□□□ -0.77
CXCL12-201ENST00000343575 TRAV8-4A0A0B4J246 113 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 F5H768 121 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 IFITM1P13164 125 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 HTN3P15516 51 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 C11orf45Q8TAV5 145 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 H3BT86 120 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 COX6CP09669 75 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 Q1RN00 199 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 MUSTN1Q8IVN3 82 aa10.23□□□□□ -0.77
CXCL12-201ENST00000343575 FAM240AA0A1B0GVK7 77 aa10.22□□□□□ -0.77
CXCL12-201ENST00000343575 PAX4O43316 350 aa10.22□□□□□ -0.77
CXCL12-201ENST00000343575 GYPEP15421 78 aa10.22□□□□□ -0.77
CXCL12-201ENST00000343575 ZNF22P17026 224 aaPredicted RBP10.22□□□□□ -0.77
CXCL12-201ENST00000343575 NTM-AS1Q6ZSK4 140 aa10.22□□□□□ -0.77
CXCL12-201ENST00000343575 C20orf203Q8NBC4 194 aa10.21□□□□□ -0.77
CXCL12-201ENST00000343575 NTN5Q8WTR8 489 aaPredicted RBP10.21□□□□□ -0.77
CXCL12-201ENST00000343575 UBE2WQ96B02 151 aa10.21□□□□□ -0.77
CXCL12-201ENST00000343575 PYGO1Q9Y3Y4 419 aa10.21□□□□□ -0.77
CXCL12-201ENST00000343575 CHCHD7Q9BUK0 85 aa10.21□□□□□ -0.78
CXCL12-201ENST00000343575 DAZ4Q86SG3 579 aaKnown RBP10.2□□□□□ -0.78
CXCL12-201ENST00000343575 DAZ3Q9NR90 486 aaKnown RBP10.2□□□□□ -0.78
CXCL12-201ENST00000343575 SPANXCQ9NY87 97 aa10.2□□□□□ -0.78
CXCL12-201ENST00000343575 A0A0J9YXY3 114 aa10.19□□□□□ -0.78
CXCL12-201ENST00000343575 NHLRC4P0CG21 123 aaPredicted RBP10.19□□□□□ -0.78
CXCL12-201ENST00000343575 EIF4EBP3O60516 100 aaPredicted RBP10.18□□□□□ -0.78
CXCL12-201ENST00000343575 C2orf82Q6UX34 121 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 TIMM21Q9BVV7 248 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 FBN3Q75N90 2809 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 IGLV4-3A0A075B6K6 122 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 DEFB131BA0A096LNP1 70 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 A0A096LPF7 62 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 B5MCH6 92 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 TIMM17BO60830 172 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 MRPS36P82909 103 aaKnown RBP10.17□□□□□ -0.78
CXCL12-201ENST00000343575 FAM104AQ969W3 186 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 SS18L2Q9UHA2 77 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 ICOSQ9Y6W8 199 aa10.17□□□□□ -0.78
CXCL12-201ENST00000343575 TRIAP1O43715 76 aa10.16□□□□□ -0.78
CXCL12-201ENST00000343575 C15orf53Q8NAA6 179 aa10.16□□□□□ -0.78
CXCL12-201ENST00000343575 H7C2G1 150 aa10.15□□□□□ -0.78
CXCL12-201ENST00000343575 IGHV3-30-3P0DP02 117 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms