RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 GAGE6Q13070 117 aa12.37□□□□□ -0.43
COL9A1-201ENST00000320755 TMEM243Q9BU79 118 aa12.37□□□□□ -0.43
COL9A1-201ENST00000320755 KRTAP1-1Q07627 177 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 C2orf82Q6UX34 121 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 LINC00308Q8TCZ7 52 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 PLAC8L1A1L4L8 177 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 SCGB1A1P11684 91 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 TOMM7Q9P0U1 55 aa12.36□□□□□ -0.43
COL9A1-201ENST00000320755 IGLV5-39A0A0G2JS06 123 aa12.35□□□□□ -0.43
COL9A1-201ENST00000320755 SMR3AQ99954 134 aa12.35□□□□□ -0.43
COL9A1-201ENST00000320755 DEFB130BP0DP73 79 aa12.35□□□□□ -0.43
COL9A1-201ENST00000320755 DEFB130AP0DP74 79 aa12.35□□□□□ -0.43
COL9A1-201ENST00000320755 C16orf74Q96GX8 76 aa12.35□□□□□ -0.43
COL9A1-201ENST00000320755 VWFP04275 2813 aa12.34□□□□□ -0.43
COL9A1-201ENST00000320755 TRBV10-2A0A0K0K1G8 114 aa12.34□□□□□ -0.43
COL9A1-201ENST00000320755 IGLV1-51P01701 117 aa12.34□□□□□ -0.43
COL9A1-201ENST00000320755 IFITM1P13164 125 aa12.34□□□□□ -0.43
COL9A1-201ENST00000320755 H7C423 109 aa12.34□□□□□ -0.43
COL9A1-201ENST00000320755 TIMM17BO60830 172 aa12.33□□□□□ -0.44
COL9A1-201ENST00000320755 SOSTDC1Q6X4U4 206 aa12.33□□□□□ -0.44
COL9A1-201ENST00000320755 C19orf73Q9NVV2 129 aa12.33□□□□□ -0.44
COL9A1-201ENST00000320755 RNASE1P07998 156 aaKnown RBP12.33□□□□□ -0.44
COL9A1-201ENST00000320755 CHCHD5Q9BSY4 110 aa12.32□□□□□ -0.44
COL9A1-201ENST00000320755 CSDC2Q9Y534 153 aaKnown RBP12.32□□□□□ -0.44
COL9A1-201ENST00000320755 CKS1BP61024 79 aa12.31□□□□□ -0.44
COL9A1-201ENST00000320755 F5H768 121 aa12.31□□□□□ -0.44
COL9A1-201ENST00000320755 IGLV4-60A0A075B6I1 120 aa12.3□□□□□ -0.44
COL9A1-201ENST00000320755 CRLF1O75462 422 aa12.3□□□□□ -0.44
COL9A1-201ENST00000320755 CSNK1G2-AS1Q8NCQ2 148 aa12.3□□□□□ -0.44
COL9A1-201ENST00000320755 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
COL9A1-201ENST00000320755 UBE2WQ96B02 151 aa12.29□□□□□ -0.44
COL9A1-201ENST00000320755 TMEM262E9PQX1 116 aa12.29□□□□□ -0.44
COL9A1-201ENST00000320755 TRBV6-4A0A1B0GX49 114 aa12.28□□□□□ -0.44
COL9A1-201ENST00000320755 LST1O00453 97 aa12.28□□□□□ -0.44
COL9A1-201ENST00000320755 C16orf95Q9H693 158 aa12.28□□□□□ -0.44
COL9A1-201ENST00000320755 A0A1B0GV72 72 aa12.27□□□□□ -0.44
COL9A1-201ENST00000320755 FHL2Q14192 279 aa12.27□□□□□ -0.44
COL9A1-201ENST00000320755 ANK3Q12955 4377 aaKnown RBP12.27□□□□□ -0.44
COL9A1-201ENST00000320755 A0A096LPF7 62 aa12.27□□□□□ -0.45
COL9A1-201ENST00000320755 PF4P02776 101 aa12.27□□□□□ -0.45
COL9A1-201ENST00000320755 C5orf38Q86SI9 138 aa12.26□□□□□ -0.45
COL9A1-201ENST00000320755 RNF183Q96D59 192 aa12.26□□□□□ -0.45
COL9A1-201ENST00000320755 C11orf68Q9H3H3 251 aaKnown RBP12.26□□□□□ -0.45
COL9A1-201ENST00000320755 TRAV8-4A0A0B4J246 113 aa12.26□□□□□ -0.45
COL9A1-201ENST00000320755 TRBV6-8A0A0A6YYG3 113 aa12.25□□□□□ -0.45
COL9A1-201ENST00000320755 M0QXV9 152 aa12.25□□□□□ -0.45
COL9A1-201ENST00000320755 OVOL2Q9BRP0 275 aa12.25□□□□□ -0.45
COL9A1-201ENST00000320755 FAM19A3Q7Z5A8 133 aa12.24□□□□□ -0.45
COL9A1-201ENST00000320755 COX7B2Q8TF08 81 aa12.24□□□□□ -0.45
COL9A1-201ENST00000320755 LINC00158P58513 81 aa12.24□□□□□ -0.45
COL9A1-201ENST00000320755 HILS1P60008 231 aa12.24□□□□□ -0.45
COL9A1-201ENST00000320755 MIR7-3HGQ8N6C7 128 aa12.24□□□□□ -0.45
COL9A1-201ENST00000320755 CLPSL2Q6UWE3 100 aa12.23□□□□□ -0.45
COL9A1-201ENST00000320755 KRTAP10-3P60369 221 aa12.23□□□□□ -0.45
COL9A1-201ENST00000320755 ATRQ13535 2644 aa12.23□□□□□ -0.45
COL9A1-201ENST00000320755 PFN2P35080 140 aa12.22□□□□□ -0.45
COL9A1-201ENST00000320755 DEFB4AO15263 64 aa12.22□□□□□ -0.45
COL9A1-201ENST00000320755 HERV-K104P63124 156 aa12.22□□□□□ -0.45
COL9A1-201ENST00000320755 H3BT86 120 aa12.22□□□□□ -0.45
COL9A1-201ENST00000320755 SNCGO76070 127 aa12.22□□□□□ -0.45
COL9A1-201ENST00000320755 TENM1Q9UKZ4 2725 aa12.21□□□□□ -0.45
COL9A1-201ENST00000320755 GYPEP15421 78 aa12.21□□□□□ -0.45
COL9A1-201ENST00000320755 LINC00482Q8N8I6 264 aa12.21□□□□□ -0.46
COL9A1-201ENST00000320755 COPS9Q8WXC6 57 aa12.21□□□□□ -0.46
COL9A1-201ENST00000320755 FAM110AQ9BQ89 295 aa12.2□□□□□ -0.46
COL9A1-201ENST00000320755 COX7A2LO14548 114 aa12.19□□□□□ -0.46
COL9A1-201ENST00000320755 SPATA3Q8NHX4 192 aa12.19□□□□□ -0.46
COL9A1-201ENST00000320755 XCL1P47992 114 aa12.19□□□□□ -0.46
COL9A1-201ENST00000320755 C15orf53Q8NAA6 179 aa12.19□□□□□ -0.46
COL9A1-201ENST00000320755 TTC32Q5I0X7 151 aa12.18□□□□□ -0.46
COL9A1-201ENST00000320755 IGHV3OR16-9A0A0B4J2B5 98 aa12.18□□□□□ -0.46
COL9A1-201ENST00000320755 J3QKU1 62 aa12.18□□□□□ -0.46
COL9A1-201ENST00000320755 SND1-IT1Q9HBX3 110 aa12.18□□□□□ -0.46
COL9A1-201ENST00000320755 OTOGQ6ZRI0 2925 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 SHISA2Q6UWI4 295 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 GAGE2BQ13066 116 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 GAGE2EQ4V326 116 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 GAGE2DQ9UEU5 116 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 FAM218AQ96MZ4 157 aa12.17□□□□□ -0.46
COL9A1-201ENST00000320755 Q9HAA7 133 aa12.16□□□□□ -0.46
COL9A1-201ENST00000320755 CRPP02741 224 aa12.16□□□□□ -0.46
COL9A1-201ENST00000320755 LINC00337Q8N6G1 96 aa12.16□□□□□ -0.46
COL9A1-201ENST00000320755 C6orf226Q5I0X4 101 aa12.15□□□□□ -0.46
COL9A1-201ENST00000320755 ANAPC13Q9BS18 74 aa12.15□□□□□ -0.46
COL9A1-201ENST00000320755 LINC00959A0A1B0GUT2 108 aa12.14□□□□□ -0.47
COL9A1-201ENST00000320755 LINC01600Q96MT4 127 aa12.14□□□□□ -0.47
COL9A1-201ENST00000320755 CITED1Q99966 193 aa12.14□□□□□ -0.47
COL9A1-201ENST00000320755 TRAV26-1A0A087WT03 109 aa12.14□□□□□ -0.47
COL9A1-201ENST00000320755 BAALC-AS2P0C853 105 aa12.14□□□□□ -0.47
COL9A1-201ENST00000320755 DEFB135Q30KP9 77 aa12.13□□□□□ -0.47
COL9A1-201ENST00000320755 FAM222AQ5U5X8 452 aa12.13□□□□□ -0.47
COL9A1-201ENST00000320755 IGKV2-28A0A075B6P5 120 aa12.13□□□□□ -0.47
COL9A1-201ENST00000320755 IGKV2D-28P01615 120 aa12.13□□□□□ -0.47
COL9A1-201ENST00000320755 CCL18P55774 89 aa12.13□□□□□ -0.47
COL9A1-201ENST00000320755 PAX4O43316 350 aa12.12□□□□□ -0.47
COL9A1-201ENST00000320755 OR13C6PQ8NH95 151 aa12.12□□□□□ -0.47
COL9A1-201ENST00000320755 A0A087WZ39 114 aa12.12□□□□□ -0.47
COL9A1-201ENST00000320755 X6R8D5 127 aa12.12□□□□□ -0.47
COL9A1-201ENST00000320755 TRAV13-2A0A0B4J235 113 aa12.12□□□□□ -0.47
COL9A1-201ENST00000320755 LY6G6DO95868 133 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 903.3 ms