RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 Q1RN00 199 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 KRTAP24-1Q3LI83 254 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 ADAMTSL4-AS1Q5T5F5 129 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 ATP6V0E2Q8NHE4 81 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 CELA1Q9UNI1 258 aa8.08□□□□□ -1.12
CUX1-202ENST00000292538 RPL24P83731 157 aaKnown RBP8.07□□□□□ -1.12
CUX1-202ENST00000292538 C11orf68Q9H3H3 251 aaKnown RBP8.07□□□□□ -1.12
CUX1-202ENST00000292538 CFC1BP0CG36 223 aa8.07□□□□□ -1.12
CUX1-202ENST00000292538 CFC1P0CG37 223 aa8.07□□□□□ -1.12
CUX1-202ENST00000292538 Q9H8V8 135 aa8.07□□□□□ -1.12
CUX1-202ENST00000292538 RETNQ9HD89 108 aa8.07□□□□□ -1.12
CUX1-202ENST00000292538 PSMB2P49721 201 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 HERVK_113P63121 156 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 TRAV26-1A0A087WT03 109 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 CYSRT1A8MQ03 144 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 CRYBA4P53673 196 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 C5orf38Q86SI9 138 aa8.06□□□□□ -1.12
CUX1-202ENST00000292538 TSPAN13O95857 204 aa8.05□□□□□ -1.12
CUX1-202ENST00000292538 PRB2P02812 416 aaPredicted RBP8.05□□□□□ -1.12
CUX1-202ENST00000292538 MEIG1Q5JSS6 88 aa8.05□□□□□ -1.12
CUX1-202ENST00000292538 PRO0255Q9UI72 69 aa8.05□□□□□ -1.12
CUX1-202ENST00000292538 XCL1P47992 114 aa8.04□□□□□ -1.12
CUX1-202ENST00000292538 PRIMA1Q86XR5 153 aa8.04□□□□□ -1.12
CUX1-202ENST00000292538 SBSPONQ8IVN8 264 aa8.04□□□□□ -1.12
CUX1-202ENST00000292538 Q8N3U1 123 aa8.04□□□□□ -1.12
CUX1-202ENST00000292538 KIR2DL5BQ8NHK3 375 aa8.04□□□□□ -1.12
CUX1-202ENST00000292538 IGLV10-54A0A075B6I4 117 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 GTSF1LQ9H1H1 148 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 SMIM9A6NGZ8 99 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 EIF4EBP3O60516 100 aaPredicted RBP8.03□□□□□ -1.12
CUX1-202ENST00000292538 TIRAPP58753 221 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 WFDC2Q14508 124 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 PRO1854Q9UHT4 67 aa8.03□□□□□ -1.12
CUX1-202ENST00000292538 KRTAP10-11P60412 298 aa8.02□□□□□ -1.12
CUX1-202ENST00000292538 WFDC9Q8NEX5 89 aa8.02□□□□□ -1.12
CUX1-202ENST00000292538 SPANXB1Q9NS25 103 aaPredicted RBP8.02□□□□□ -1.12
CUX1-202ENST00000292538 MGAM2Q2M2H8 2515 aa8.02□□□□□ -1.13
CUX1-202ENST00000292538 SMIM1B2RUZ4 78 aa8.02□□□□□ -1.13
CUX1-202ENST00000292538 SMAGPQ0VAQ4 97 aa8.02□□□□□ -1.13
CUX1-202ENST00000292538 OCIAD2Q56VL3 154 aa8.02□□□□□ -1.13
CUX1-202ENST00000292538 ZFAND6Q6FIF0 208 aa8.01□□□□□ -1.13
CUX1-202ENST00000292538 SH2D6Q7Z4S9 175 aa8.01□□□□□ -1.13
CUX1-202ENST00000292538 VPS25Q9BRG1 176 aa8.01□□□□□ -1.13
CUX1-202ENST00000292538 CSDC2Q9Y534 153 aaKnown RBP8.01□□□□□ -1.13
CUX1-202ENST00000292538 LYRM9A8MSI8 78 aa8.01□□□□□ -1.13
CUX1-202ENST00000292538 A0A1B0GWB2 263 aa8□□□□□ -1.13
CUX1-202ENST00000292538 ATP5G1P05496 136 aa8□□□□□ -1.13
CUX1-202ENST00000292538 SPART-AS1P0CW21 52 aa8□□□□□ -1.13
CUX1-202ENST00000292538 ANK2Q01484 3957 aa8□□□□□ -1.13
CUX1-202ENST00000292538 CIRBPQ14011 172 aaKnown RBP8□□□□□ -1.13
CUX1-202ENST00000292538 ERG28Q9UKR5 140 aa8□□□□□ -1.13
CUX1-202ENST00000292538 ANGP03950 147 aaKnown RBP8□□□□□ -1.13
CUX1-202ENST00000292538 Q8NAQ8 132 aa8□□□□□ -1.13
CUX1-202ENST00000292538 LITAFQ99732 161 aa8□□□□□ -1.13
CUX1-202ENST00000292538 G3V4G9 280 aa7.99□□□□□ -1.13
CUX1-202ENST00000292538 ETDBQ3ZM63 59 aa7.99□□□□□ -1.13
CUX1-202ENST00000292538 LINC00269Q8N2A0 174 aa7.99□□□□□ -1.13
CUX1-202ENST00000292538 NBEAL1Q6ZS30 2694 aa7.99□□□□□ -1.13
CUX1-202ENST00000292538 PFN2P35080 140 aa7.99□□□□□ -1.13
CUX1-202ENST00000292538 TENM3Q9P273 2699 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 MIFP14174 115 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 MIAQ16674 131 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 RNF183Q96D59 192 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 IGLV5-45A0A087WSX0 123 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 NDUFA1O15239 70 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 MRAPQ8TCY5 172 aa7.98□□□□□ -1.13
CUX1-202ENST00000292538 LINC00612Q8N6U2 182 aa7.97□□□□□ -1.13
CUX1-202ENST00000292538 LINC00959A0A1B0GUT2 108 aa7.97□□□□□ -1.13
CUX1-202ENST00000292538 TCL1BO95988 128 aa7.97□□□□□ -1.13
CUX1-202ENST00000292538 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.96□□□□□ -1.13
CUX1-202ENST00000292538 TEX48A0A1B0GUV7 120 aa7.96□□□□□ -1.13
CUX1-202ENST00000292538 LINC00158P58513 81 aa7.96□□□□□ -1.13
CUX1-202ENST00000292538 IGLV5-39A0A0G2JS06 123 aa7.96□□□□□ -1.14
CUX1-202ENST00000292538 K7ERU9 68 aa7.96□□□□□ -1.14
CUX1-202ENST00000292538 IGHV3-33P01772 117 aa7.96□□□□□ -1.14
CUX1-202ENST00000292538 C6orf226Q5I0X4 101 aa7.96□□□□□ -1.14
CUX1-202ENST00000292538 COX7B2Q8TF08 81 aa7.96□□□□□ -1.14
CUX1-202ENST00000292538 H7C423 109 aa7.95□□□□□ -1.14
CUX1-202ENST00000292538 SS18Q15532 418 aa7.95□□□□□ -1.14
CUX1-202ENST00000292538 DEFB121Q5J5C9 76 aa7.95□□□□□ -1.14
CUX1-202ENST00000292538 RPL13AP40429 203 aaKnown RBP7.94□□□□□ -1.14
CUX1-202ENST00000292538 C2orf82Q6UX34 121 aa7.94□□□□□ -1.14
CUX1-202ENST00000292538 LINC00308Q8TCZ7 52 aa7.94□□□□□ -1.14
CUX1-202ENST00000292538 IGHV3OR16-9A0A0B4J2B5 98 aa7.94□□□□□ -1.14
CUX1-202ENST00000292538 F8W1H4 67 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 MRPL23Q16540 153 aaKnown RBP7.93□□□□□ -1.14
CUX1-202ENST00000292538 SPANXDQ9BXN6 97 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 SPANXCQ9NY87 97 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 Q6ZTC4 211 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 MIR7-3HGQ8N6C7 128 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 LINC00526Q96FQ7 95 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 KLK12Q9UKR0 248 aa7.93□□□□□ -1.14
CUX1-202ENST00000292538 TRIAP1O43715 76 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 MALP21145 153 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 SOSTDC1Q6X4U4 206 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 A0A0B4J2C4 111 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 C9JAW5 83 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 LYRM7Q5U5X0 104 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 ICOSQ9Y6W8 199 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 A0A0J9YWU9 116 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms