RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 A0A1W2PPM0 123 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 A6NJY4 79 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 RETNQ9HD89 108 aa11.54□□□□□ -0.56
CCDC40-201ENST00000269318 TMEM238C9JI98 176 aa11.52□□□□□ -0.56
CCDC40-201ENST00000269318 SAMD5Q5TGI4 173 aa11.52□□□□□ -0.56
CCDC40-201ENST00000269318 A0A1B0GUV1 79 aa11.52□□□□□ -0.57
CCDC40-201ENST00000269318 TEX48A0A1B0GUV7 120 aa11.52□□□□□ -0.57
CCDC40-201ENST00000269318 IGLL5B9A064 214 aa11.52□□□□□ -0.57
CCDC40-201ENST00000269318 NDUFA1O15239 70 aa11.51□□□□□ -0.57
CCDC40-201ENST00000269318 RBX1P62877 108 aa11.5□□□□□ -0.57
CCDC40-201ENST00000269318 GAGE10A6NGK3 116 aa11.49□□□□□ -0.57
CCDC40-201ENST00000269318 K7EP34 96 aa11.49□□□□□ -0.57
CCDC40-201ENST00000269318 HTN3P15516 51 aa11.49□□□□□ -0.57
CCDC40-201ENST00000269318 COL6A5A8TX70 2615 aa11.49□□□□□ -0.57
CCDC40-201ENST00000269318 TMEM262E9PQX1 116 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 FABP2P12104 132 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 ADAMTSL4-AS1Q5T5F5 129 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 IGKV3OR2-268A0A0C4DH90 116 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 MRPL23Q16540 153 aaKnown RBP11.48□□□□□ -0.57
CCDC40-201ENST00000269318 MUSTN1Q8IVN3 82 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 SPANXDQ9BXN6 97 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 SPANXCQ9NY87 97 aa11.48□□□□□ -0.57
CCDC40-201ENST00000269318 IGHV3OR16-9A0A0B4J2B5 98 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 LINC00959A0A1B0GUT2 108 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 TIMM17BO60830 172 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 CFC1BP0CG36 223 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 CFC1P0CG37 223 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 GTF2H5Q6ZYL4 71 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 C11orf68Q9H3H3 251 aaKnown RBP11.47□□□□□ -0.57
CCDC40-201ENST00000269318 Q9H8V8 135 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 SPCS1Q9Y6A9 102 aa11.47□□□□□ -0.57
CCDC40-201ENST00000269318 A4D1N5 150 aa11.46□□□□□ -0.58
CCDC40-201ENST00000269318 APOMO95445 188 aa11.46□□□□□ -0.58
CCDC40-201ENST00000269318 ZNF625Q96I27 306 aaPredicted RBP11.46□□□□□ -0.58
CCDC40-201ENST00000269318 ICOSQ9Y6W8 199 aa11.46□□□□□ -0.58
CCDC40-201ENST00000269318 RPL24P83731 157 aaKnown RBP11.45□□□□□ -0.58
CCDC40-201ENST00000269318 MIAQ16674 131 aa11.45□□□□□ -0.58
CCDC40-201ENST00000269318 SH2D6Q7Z4S9 175 aa11.45□□□□□ -0.58
CCDC40-201ENST00000269318 PGPEP1Q9NXJ5 209 aa11.45□□□□□ -0.58
CCDC40-201ENST00000269318 EIF4EBP3O60516 100 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-201ENST00000269318 A0A087WZ39 114 aa11.43□□□□□ -0.58
CCDC40-201ENST00000269318 TSPAN13O95857 204 aa11.43□□□□□ -0.58
CCDC40-201ENST00000269318 LELP1Q5T871 98 aa11.43□□□□□ -0.58
CCDC40-201ENST00000269318 Q8N3U1 123 aa11.42□□□□□ -0.58
CCDC40-201ENST00000269318 A0A0B4J2C4 111 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 PRSS2P07478 247 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 Q6ZTC4 211 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 H3BNG1 76 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 SS18Q15532 418 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 COX7B2Q8TF08 81 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 PRO1854Q9UHT4 67 aa11.41□□□□□ -0.58
CCDC40-201ENST00000269318 HERV-K104P63124 156 aa11.4□□□□□ -0.58
CCDC40-201ENST00000269318 CLPSL2Q6UWE3 100 aa11.4□□□□□ -0.58
CCDC40-201ENST00000269318 C5orf38Q86SI9 138 aa11.4□□□□□ -0.58
CCDC40-201ENST00000269318 LINC00269Q8N2A0 174 aa11.4□□□□□ -0.58
CCDC40-201ENST00000269318 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-201ENST00000269318 A0A0J9YWU9 116 aa11.39□□□□□ -0.59
CCDC40-201ENST00000269318 IFITM1P13164 125 aa11.39□□□□□ -0.59
CCDC40-201ENST00000269318 CIRBPQ14011 172 aaKnown RBP11.39□□□□□ -0.59
CCDC40-201ENST00000269318 XCL1P47992 114 aa11.39□□□□□ -0.59
CCDC40-201ENST00000269318 DAND5Q8N907 189 aa11.39□□□□□ -0.59
CCDC40-201ENST00000269318 PRB2P02812 416 aaPredicted RBP11.38□□□□□ -0.59
CCDC40-201ENST00000269318 KRTAP21-3Q3LHN1 58 aa11.38□□□□□ -0.59
CCDC40-201ENST00000269318 LYPD5Q6UWN5 251 aa11.38□□□□□ -0.59
CCDC40-201ENST00000269318 TENM3Q9P273 2699 aa11.38□□□□□ -0.59
CCDC40-201ENST00000269318 IGHV3-33P01772 117 aa11.37□□□□□ -0.59
CCDC40-201ENST00000269318 ANGP03950 147 aaKnown RBP11.37□□□□□ -0.59
CCDC40-201ENST00000269318 NPC2P61916 151 aa11.37□□□□□ -0.59
CCDC40-201ENST00000269318 REG3AQ06141 175 aa11.37□□□□□ -0.59
CCDC40-201ENST00000269318 KPRPQ5T749 579 aaPredicted RBP11.37□□□□□ -0.59
CCDC40-201ENST00000269318 NOTCH1P46531 2555 aa11.36□□□□□ -0.59
CCDC40-201ENST00000269318 K7EIL1 84 aa11.36□□□□□ -0.59
CCDC40-201ENST00000269318 LINC01561Q8N1V8 128 aa11.36□□□□□ -0.59
CCDC40-201ENST00000269318 TOMM7Q9P0U1 55 aa11.36□□□□□ -0.59
CCDC40-201ENST00000269318 LINC00308Q8TCZ7 52 aa11.36□□□□□ -0.59
CCDC40-201ENST00000269318 NANOS2P60321 138 aaKnown RBP11.35□□□□□ -0.59
CCDC40-201ENST00000269318 MEIG1Q5JSS6 88 aa11.35□□□□□ -0.59
CCDC40-201ENST00000269318 CD164L2Q6UWJ8 174 aa11.35□□□□□ -0.59
CCDC40-201ENST00000269318 C11orf45Q8TAV5 145 aa11.34□□□□□ -0.59
CCDC40-201ENST00000269318 A0A0U1RRA0 63 aa11.34□□□□□ -0.59
CCDC40-201ENST00000269318 SFTA2Q6UW10 78 aa11.34□□□□□ -0.59
CCDC40-201ENST00000269318 SOSTDC1Q6X4U4 206 aa11.34□□□□□ -0.59
CCDC40-201ENST00000269318 CHCHD10Q8WYQ3 142 aaPredicted RBP11.34□□□□□ -0.59
CCDC40-201ENST00000269318 TM2D3Q9BRN9 247 aa11.34□□□□□ -0.59
CCDC40-201ENST00000269318 NBEAL1Q6ZS30 2694 aa11.33□□□□□ -0.6
CCDC40-201ENST00000269318 SPATA25Q9BR10 227 aa11.33□□□□□ -0.6
CCDC40-201ENST00000269318 ERG28Q9UKR5 140 aa11.33□□□□□ -0.6
CCDC40-201ENST00000269318 LOC107984156A0A0G2JMH3 177 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 H3BMG7 143 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 ARL17AQ8IVW1 177 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 PPDPFQ9H3Y8 114 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 PRR34Q9NV39 138 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 MDFIQ99750 246 aa11.32□□□□□ -0.6
CCDC40-201ENST00000269318 IGLV10-54A0A075B6I4 117 aa11.31□□□□□ -0.6
CCDC40-201ENST00000269318 Q8IZM0 81 aa11.31□□□□□ -0.6
CCDC40-201ENST00000269318 DEFB131BA0A096LNP1 70 aa11.3□□□□□ -0.6
CCDC40-201ENST00000269318 COPS9Q8WXC6 57 aa11.3□□□□□ -0.6
CCDC40-201ENST00000269318 COX7A2LO14548 114 aa11.3□□□□□ -0.6
CCDC40-201ENST00000269318 FOXI1Q12951 378 aa11.3□□□□□ -0.6
CCDC40-201ENST00000269318 LYRM7Q5U5X0 104 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms