RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 C9JAW5 83 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 IGHV3-33P01772 117 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 GYPEP15421 78 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 ANKRD29Q8N6D5 301 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 SVIPQ8NHG7 77 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 TRAV8-4A0A0B4J246 113 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 CRLF1O75462 422 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 SHISA2Q6UWI4 295 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 UBE2WQ96B02 151 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 CDKN2A-AS1Q9UH64 79 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 KRTAP1-3Q8IUG1 177 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 SPATA25Q9BR10 227 aa3.28□□□□□ -1.88
SCN1A-210ENST00000635776 IGKV3OR2-268A0A0C4DH90 116 aa3.28□□□□□ -1.89
SCN1A-210ENST00000635776 C3orf56Q8N813 242 aa3.28□□□□□ -1.89
SCN1A-210ENST00000635776 OPRPNQ99935 248 aaPredicted RBP3.28□□□□□ -1.89
SCN1A-210ENST00000635776 ESM1Q9NQ30 184 aa3.28□□□□□ -1.89
SCN1A-210ENST00000635776 A0A1B0GX51 115 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 GAGE12HA6NDE8 117 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 TRACP01848 142 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 OR13C6PQ8NH95 151 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 RMI2Q96E14 147 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 FOXI1Q12951 378 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 RBMY1FQ15415 496 aaKnown RBP3.27□□□□□ -1.89
SCN1A-210ENST00000635776 LINC00242Q5T6M2 205 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 IGLV5-39A0A0G2JS06 123 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 F5H768 121 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 CDH23Q9H251 3354 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 LINC00308Q8TCZ7 52 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 COX7A2LO14548 114 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 HIST2H2BCQ6DN03 193 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 HIST2H2BDQ6DRA6 164 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 TNRC18O15417 2968 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-210ENST00000635776 COX17Q14061 63 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 ANAPC13Q9BS18 74 aa3.27□□□□□ -1.89
SCN1A-210ENST00000635776 F8WDY8 70 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 TRAV8-3A0A0A6YYJ7 113 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 SND1-IT1Q9HBX3 110 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 PKIGQ9Y2B9 76 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 SMIM1B2RUZ4 78 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 EIF4EBP3O60516 100 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-210ENST00000635776 LAMA2P24043 3122 aaKnown RBP3.26□□□□□ -1.89
SCN1A-210ENST00000635776 Q8IZM0 81 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 FHL2Q14192 279 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 TMEM126AQ9H061 195 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 PRRC2AP48634 2157 aaKnown RBP3.26□□□□□ -1.89
SCN1A-210ENST00000635776 CEMP1Q6PRD7 247 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-210ENST00000635776 CD164L2Q6UWJ8 174 aa3.26□□□□□ -1.89
SCN1A-210ENST00000635776 A0A087WZ39 114 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 ANGP03950 147 aaKnown RBP3.25□□□□□ -1.89
SCN1A-210ENST00000635776 H3BNG1 76 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 LELP1Q5T871 98 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 WFDC9Q8NEX5 89 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 DEFB104AQ8WTQ1 72 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 RNASE13Q5GAN3 156 aaKnown RBP3.25□□□□□ -1.89
SCN1A-210ENST00000635776 UNC80Q8N2C7 3258 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 TCL1BO95988 128 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 GAGE2BQ13066 116 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 GAGE2EQ4V326 116 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 GAGE2DQ9UEU5 116 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 INAFM1C9JVW0 142 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 HTN3P15516 51 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 WFDC2Q14508 124 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 LINC00612Q8N6U2 182 aa3.25□□□□□ -1.89
SCN1A-210ENST00000635776 SZT2Q5T011 3432 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 JMJD7-PLA2G4BH0Y9G9 81 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 ZNF561-AS1K7EIQ3 104 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 LST1O00453 97 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 NTN5Q8WTR8 489 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-210ENST00000635776 ZNF462Q96JM2 2506 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 TSPEAR-AS2P59090 65 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 ZNF625Q96I27 306 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-210ENST00000635776 LINC00959A0A1B0GUT2 108 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 SBSPONQ8IVN8 264 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 DEFB135Q30KP9 77 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 MIR7-3HGQ8N6C7 128 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 PRO0461Q9UI25 63 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 CHD8Q9HCK8 2581 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 HIVEP2P31629 2446 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 NDUFC2O95298 119 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 FAM240AA0A1B0GVK7 77 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 REG3AQ06141 175 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 KRTAP1-1Q07627 177 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 Q6ZSN1 163 aa3.24□□□□□ -1.89
SCN1A-210ENST00000635776 SPTBN4Q9H254 2564 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 A0A0U1RRA0 63 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 PDE6GP18545 87 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 IGHV4-28A0A0C4DH34 117 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 RPL28P46779 137 aaKnown RBP3.23□□□□□ -1.89
SCN1A-210ENST00000635776 C5orf38Q86SI9 138 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 C19orf73Q9NVV2 129 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 XCL1P47992 114 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 CSNK1G2-AS1Q8NCQ2 148 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 PFN2P35080 140 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 TRIAP1O43715 76 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 NPC2P61916 151 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 ORMDL1Q9P0S3 153 aa3.23□□□□□ -1.89
SCN1A-210ENST00000635776 MYO18BQ8IUG5 2567 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 XIRP2A4UGR9 3374 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 SPAG11BQ08648 103 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 C15orf53Q8NAA6 179 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms