RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 IGKV3OR2-268A0A0C4DH90 116 aa11.37□□□□□ -0.59
SHKBP1-212ENST00000596163 RAB5AP20339 215 aa11.37□□□□□ -0.59
SHKBP1-212ENST00000596163 KRTAP26-1Q6PEX3 210 aa11.37□□□□□ -0.59
SHKBP1-212ENST00000596163 RPS10P5Q9NQ39 176 aa11.37□□□□□ -0.59
SHKBP1-212ENST00000596163 USP17L23D6RBM5 183 aa11.36□□□□□ -0.59
SHKBP1-212ENST00000596163 COX19Q49B96 90 aa11.36□□□□□ -0.59
SHKBP1-212ENST00000596163 MAP1LC3AQ9H492 121 aa11.36□□□□□ -0.59
SHKBP1-212ENST00000596163 CSDC2Q9Y534 153 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-212ENST00000596163 LRP1BQ9NZR2 4599 aa11.36□□□□□ -0.59
SHKBP1-212ENST00000596163 PRSS47A8MTI9 375 aa11.35□□□□□ -0.59
SHKBP1-212ENST00000596163 KRTAP10-1P60331 282 aa11.35□□□□□ -0.59
SHKBP1-212ENST00000596163 ZNF664Q8N3J9 261 aa11.35□□□□□ -0.59
SHKBP1-212ENST00000596163 CDC42SE2Q9NRR3 84 aa11.35□□□□□ -0.59
SHKBP1-212ENST00000596163 APOC3P02656 99 aa11.34□□□□□ -0.59
SHKBP1-212ENST00000596163 CFAP161Q6P656 301 aa11.34□□□□□ -0.59
SHKBP1-212ENST00000596163 TIMM21Q9BVV7 248 aa11.34□□□□□ -0.59
SHKBP1-212ENST00000596163 DNAH5Q8TE73 4624 aa11.34□□□□□ -0.59
SHKBP1-212ENST00000596163 GAGE12HA6NDE8 117 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 SNAPINO95295 136 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 SS18Q15532 418 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 SVBPQ8N300 66 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 CHCHD10Q8WYQ3 142 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 GNB1LQ9BYB4 327 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 UBE2D4Q9Y2X8 147 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 HERC2O95714 4834 aa11.33□□□□□ -0.6
SHKBP1-212ENST00000596163 KIAA1109Q2LD37 5005 aa11.32□□□□□ -0.6
SHKBP1-212ENST00000596163 LOC389332A0A1B0GUA5 103 aa11.32□□□□□ -0.6
SHKBP1-212ENST00000596163 CCL25O15444 150 aa11.32□□□□□ -0.6
SHKBP1-212ENST00000596163 LINC00959A0A1B0GUT2 108 aa11.31□□□□□ -0.6
SHKBP1-212ENST00000596163 SPANXA1Q9NS26 97 aa11.31□□□□□ -0.6
SHKBP1-212ENST00000596163 K7EMI3 77 aa11.3□□□□□ -0.6
SHKBP1-212ENST00000596163 PRSS1P07477 247 aa11.3□□□□□ -0.6
SHKBP1-212ENST00000596163 Q8N8P6 123 aa11.3□□□□□ -0.6
SHKBP1-212ENST00000596163 AP5S1Q9NUS5 200 aa11.3□□□□□ -0.6
SHKBP1-212ENST00000596163 MT-ND6P03923 174 aa11.29□□□□□ -0.6
SHKBP1-212ENST00000596163 NXT2Q9NPJ8 142 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-212ENST00000596163 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 C1orf196B1AJZ1 125 aa11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 XCL1P47992 114 aa11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 RPL39P62891 51 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 ORMDL2Q53FV1 153 aa11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 RYR1P21817 5038 aa11.28□□□□□ -0.6
SHKBP1-212ENST00000596163 G0S2P27469 103 aa11.27□□□□□ -0.61
SHKBP1-212ENST00000596163 IFI27P40305 119 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-212ENST00000596163 KIAA1644Q3SXP7 199 aa11.27□□□□□ -0.61
SHKBP1-212ENST00000596163 CD164L2Q6UWJ8 174 aa11.27□□□□□ -0.61
SHKBP1-212ENST00000596163 XGP55808 180 aa11.26□□□□□ -0.61
SHKBP1-212ENST00000596163 MRPS36P82909 103 aaKnown RBP11.26□□□□□ -0.61
SHKBP1-212ENST00000596163 FOXI1Q12951 378 aa11.26□□□□□ -0.61
SHKBP1-212ENST00000596163 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-212ENST00000596163 FABP9Q0Z7S8 132 aa11.25□□□□□ -0.61
SHKBP1-212ENST00000596163 Q6ZUT4 128 aa11.25□□□□□ -0.61
SHKBP1-212ENST00000596163 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
SHKBP1-212ENST00000596163 PYGO1Q9Y3Y4 419 aa11.25□□□□□ -0.61
SHKBP1-212ENST00000596163 TRAV13-1A0A0B4J241 112 aa11.24□□□□□ -0.61
SHKBP1-212ENST00000596163 CNBPP62633 177 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-212ENST00000596163 RNASE13Q5GAN3 156 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-212ENST00000596163 MRPL18Q9H0U6 180 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-212ENST00000596163 IGHV1-58A0A0C4DH39 117 aa11.23□□□□□ -0.61
SHKBP1-212ENST00000596163 Q8N1X5 172 aa11.23□□□□□ -0.61
SHKBP1-212ENST00000596163 C9orf163Q8N9P6 203 aa11.23□□□□□ -0.61
SHKBP1-212ENST00000596163 PRSS3P2Q8NHM4 247 aa11.23□□□□□ -0.61
SHKBP1-212ENST00000596163 APOBP04114 4563 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-212ENST00000596163 MALP21145 153 aa11.22□□□□□ -0.61
SHKBP1-212ENST00000596163 LINC01620Q4KN68 170 aa11.22□□□□□ -0.61
SHKBP1-212ENST00000596163 C2orf66Q6UXQ4 117 aa11.22□□□□□ -0.61
SHKBP1-212ENST00000596163 C15orf56Q8N910 161 aa11.22□□□□□ -0.61
SHKBP1-212ENST00000596163 ALKBH7Q9BT30 221 aaPredicted RBP11.22□□□□□ -0.61
SHKBP1-212ENST00000596163 TGIF2-C20orf24A0A0A6YYL0 155 aa11.21□□□□□ -0.61
SHKBP1-212ENST00000596163 COX7A2LO14548 114 aa11.21□□□□□ -0.61
SHKBP1-212ENST00000596163 Q6ZSA8 131 aa11.21□□□□□ -0.61
SHKBP1-212ENST00000596163 FAM30AQ9NZY2 134 aa11.21□□□□□ -0.61
SHKBP1-212ENST00000596163 TRAPPC1Q9Y5R8 145 aa11.21□□□□□ -0.61
SHKBP1-212ENST00000596163 GVQW2A0A096LPI5 108 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 IFITM10A6NMD0 228 aa11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 NPSP0C0P6 89 aa11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 Q6ZN92 141 aa11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 TMEM141Q96I45 108 aa11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 OPRPNQ99935 248 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-212ENST00000596163 HSPG2P98160 4391 aa11.19□□□□□ -0.62
SHKBP1-212ENST00000596163 LINC01549A6NIU2 74 aa11.19□□□□□ -0.62
SHKBP1-212ENST00000596163 HIGD2BQ4VC39 106 aa11.19□□□□□ -0.62
SHKBP1-212ENST00000596163 IGLV4-3A0A075B6K6 122 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 IGHV3-64A0A075B6Q5 118 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 ZNF561-AS1K7EIQ3 104 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 APOMO95445 188 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 PAPPA-AS1Q5QFB9 102 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 TEX43Q6ZNM6 134 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 FAM104AQ969W3 186 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 C2orf88Q9BSF0 95 aa11.18□□□□□ -0.62
SHKBP1-212ENST00000596163 PCLOQ9Y6V0 5065 aa11.17□□□□□ -0.62
SHKBP1-212ENST00000596163 FA2HQ7L5A8 372 aa11.17□□□□□ -0.62
SHKBP1-212ENST00000596163 SLC7A5P1Q8MH63 180 aa11.17□□□□□ -0.62
SHKBP1-212ENST00000596163 VCX2Q9H322 139 aa11.17□□□□□ -0.62
SHKBP1-212ENST00000596163 SMCO4Q9NRQ5 59 aa11.17□□□□□ -0.62
SHKBP1-212ENST00000596163 CHAC1Q9BUX1 264 aa11.16□□□□□ -0.62
SHKBP1-212ENST00000596163 LINC01546A6NGU7 62 aa11.15□□□□□ -0.62
SHKBP1-212ENST00000596163 EPM2AB3EWF7 344 aa11.15□□□□□ -0.62
SHKBP1-212ENST00000596163 FAM229AH3BQW9 127 aa11.15□□□□□ -0.62
SHKBP1-212ENST00000596163 SLPIP03973 132 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms