RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MRPL52Q86TS9 123 aaKnown RBP9.91□□□□□ -0.82
UPF1-202ENST00000594243 OR5A1Q8NGJ0 315 aa9.91□□□□□ -0.82
UPF1-202ENST00000594243 PRSS47A8MTI9 375 aa9.9□□□□□ -0.82
UPF1-202ENST00000594243 CDK2AP2O75956 126 aa9.9□□□□□ -0.82
UPF1-202ENST00000594243 APOC3P02656 99 aa9.9□□□□□ -0.82
UPF1-202ENST00000594243 DGAT2L7PQ6IED9 249 aa9.9□□□□□ -0.82
UPF1-202ENST00000594243 IGKV3OR2-268A0A0C4DH90 116 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 RAB5AP20339 215 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 COX19Q49B96 90 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 KRTAP26-1Q6PEX3 210 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 SVBPQ8N300 66 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 CDC42SE2Q9NRR3 84 aa9.89□□□□□ -0.83
UPF1-202ENST00000594243 CSDC2Q9Y534 153 aaKnown RBP9.89□□□□□ -0.83
UPF1-202ENST00000594243 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.88□□□□□ -0.83
UPF1-202ENST00000594243 SNAPINO95295 136 aa9.88□□□□□ -0.83
UPF1-202ENST00000594243 ZNF664Q8N3J9 261 aa9.88□□□□□ -0.83
UPF1-202ENST00000594243 MAP1LC3AQ9H492 121 aa9.88□□□□□ -0.83
UPF1-202ENST00000594243 USP17L23D6RBM5 183 aa9.87□□□□□ -0.83
UPF1-202ENST00000594243 GNB1LQ9BYB4 327 aa9.87□□□□□ -0.83
UPF1-202ENST00000594243 UBE2D4Q9Y2X8 147 aa9.87□□□□□ -0.83
UPF1-202ENST00000594243 LOC389332A0A1B0GUA5 103 aa9.86□□□□□ -0.83
UPF1-202ENST00000594243 TIMM21Q9BVV7 248 aa9.86□□□□□ -0.83
UPF1-202ENST00000594243 KRTAP10-1P60331 282 aa9.85□□□□□ -0.83
UPF1-202ENST00000594243 SS18Q15532 418 aa9.85□□□□□ -0.83
UPF1-202ENST00000594243 LINC00959A0A1B0GUT2 108 aa9.84□□□□□ -0.83
UPF1-202ENST00000594243 GAGE12HA6NDE8 117 aa9.84□□□□□ -0.83
UPF1-202ENST00000594243 K7EMI3 77 aa9.84□□□□□ -0.83
UPF1-202ENST00000594243 Q8N8P6 123 aa9.84□□□□□ -0.83
UPF1-202ENST00000594243 CHCHD10Q8WYQ3 142 aaPredicted RBP9.84□□□□□ -0.83
UPF1-202ENST00000594243 CCL25O15444 150 aa9.83□□□□□ -0.84
UPF1-202ENST00000594243 MT-ND6P03923 174 aa9.83□□□□□ -0.84
UPF1-202ENST00000594243 KIAA1644Q3SXP7 199 aa9.83□□□□□ -0.84
UPF1-202ENST00000594243 CFAP161Q6P656 301 aa9.83□□□□□ -0.84
UPF1-202ENST00000594243 SPANXA1Q9NS26 97 aa9.83□□□□□ -0.84
UPF1-202ENST00000594243 PRSS1P07477 247 aa9.82□□□□□ -0.84
UPF1-202ENST00000594243 RPL39P62891 51 aaKnown RBP9.82□□□□□ -0.84
UPF1-202ENST00000594243 NXT2Q9NPJ8 142 aaKnown RBP9.82□□□□□ -0.84
UPF1-202ENST00000594243 ABCA13Q86UQ4 5058 aa9.81□□□□□ -0.84
UPF1-202ENST00000594243 C1orf196B1AJZ1 125 aa9.81□□□□□ -0.84
UPF1-202ENST00000594243 XCL1P47992 114 aa9.81□□□□□ -0.84
UPF1-202ENST00000594243 ORMDL2Q53FV1 153 aa9.81□□□□□ -0.84
UPF1-202ENST00000594243 HSPG2P98160 4391 aa9.8□□□□□ -0.84
UPF1-202ENST00000594243 G0S2P27469 103 aa9.8□□□□□ -0.84
UPF1-202ENST00000594243 IFI27P40305 119 aaPredicted RBP9.8□□□□□ -0.84
UPF1-202ENST00000594243 MRPS36P82909 103 aaKnown RBP9.8□□□□□ -0.84
UPF1-202ENST00000594243 MRPL18Q9H0U6 180 aaKnown RBP9.8□□□□□ -0.84
UPF1-202ENST00000594243 PYGO1Q9Y3Y4 419 aa9.8□□□□□ -0.84
UPF1-202ENST00000594243 LRP1BQ9NZR2 4599 aa9.8□□□□□ -0.84
UPF1-202ENST00000594243 hDV102S1A0JD36 115 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 FABP9Q0Z7S8 132 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 FOXI1Q12951 378 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 RNASE13Q5GAN3 156 aaKnown RBP9.79□□□□□ -0.84
UPF1-202ENST00000594243 CD164L2Q6UWJ8 174 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 Q6ZUT4 128 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 PRSS3P2Q8NHM4 247 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 ALKBH7Q9BT30 221 aaPredicted RBP9.79□□□□□ -0.84
UPF1-202ENST00000594243 AP5S1Q9NUS5 200 aa9.79□□□□□ -0.84
UPF1-202ENST00000594243 TGIF2-C20orf24A0A0A6YYL0 155 aa9.78□□□□□ -0.84
UPF1-202ENST00000594243 XGP55808 180 aa9.78□□□□□ -0.84
UPF1-202ENST00000594243 SLC7A5P1Q8MH63 180 aa9.78□□□□□ -0.84
UPF1-202ENST00000594243 CYSLTR1Q9Y271 337 aa9.78□□□□□ -0.84
UPF1-202ENST00000594243 TRAV13-1A0A0B4J241 112 aa9.77□□□□□ -0.85
UPF1-202ENST00000594243 C2orf66Q6UXQ4 117 aa9.77□□□□□ -0.85
UPF1-202ENST00000594243 TRAPPC1Q9Y5R8 145 aa9.77□□□□□ -0.85
UPF1-202ENST00000594243 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.76□□□□□ -0.85
UPF1-202ENST00000594243 CNBPP62633 177 aaKnown RBP9.76□□□□□ -0.85
UPF1-202ENST00000594243 LINC01620Q4KN68 170 aa9.76□□□□□ -0.85
UPF1-202ENST00000594243 C15orf56Q8N910 161 aa9.76□□□□□ -0.85
UPF1-202ENST00000594243 C9orf163Q8N9P6 203 aa9.76□□□□□ -0.85
UPF1-202ENST00000594243 OPRPNQ99935 248 aaPredicted RBP9.76□□□□□ -0.85
UPF1-202ENST00000594243 IGHV1-58A0A0C4DH39 117 aa9.75□□□□□ -0.85
UPF1-202ENST00000594243 FAM104AQ969W3 186 aa9.75□□□□□ -0.85
UPF1-202ENST00000594243 FAM30AQ9NZY2 134 aa9.75□□□□□ -0.85
UPF1-202ENST00000594243 IFITM10A6NMD0 228 aa9.74□□□□□ -0.85
UPF1-202ENST00000594243 NPSP0C0P6 89 aa9.74□□□□□ -0.85
UPF1-202ENST00000594243 MALP21145 153 aa9.74□□□□□ -0.85
UPF1-202ENST00000594243 Q6ZSA8 131 aa9.74□□□□□ -0.85
UPF1-202ENST00000594243 TMEM141Q96I45 108 aa9.74□□□□□ -0.85
UPF1-202ENST00000594243 IGLV4-3A0A075B6K6 122 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 GVQW2A0A096LPI5 108 aaPredicted RBP9.73□□□□□ -0.85
UPF1-202ENST00000594243 LINC01549A6NIU2 74 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 COX7A2LO14548 114 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 HIGD2BQ4VC39 106 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 Q6ZN92 141 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 TEX43Q6ZNM6 134 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 Q8N1X5 172 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 SMCO4Q9NRQ5 59 aa9.73□□□□□ -0.85
UPF1-202ENST00000594243 APOBP04114 4563 aaKnown RBP9.72□□□□□ -0.85
UPF1-202ENST00000594243 LINC01546A6NGU7 62 aa9.72□□□□□ -0.85
UPF1-202ENST00000594243 PAPPA-AS1Q5QFB9 102 aa9.72□□□□□ -0.85
UPF1-202ENST00000594243 FA2HQ7L5A8 372 aa9.72□□□□□ -0.85
UPF1-202ENST00000594243 TOMM6Q96B49 74 aa9.72□□□□□ -0.85
UPF1-202ENST00000594243 VCX2Q9H322 139 aa9.72□□□□□ -0.85
UPF1-202ENST00000594243 DNAH5Q8TE73 4624 aa9.71□□□□□ -0.85
UPF1-202ENST00000594243 IGIPA6NJ69 53 aa9.71□□□□□ -0.86
UPF1-202ENST00000594243 ZNF561-AS1K7EIQ3 104 aa9.71□□□□□ -0.86
UPF1-202ENST00000594243 APOMO95445 188 aa9.71□□□□□ -0.86
UPF1-202ENST00000594243 SLPIP03973 132 aa9.71□□□□□ -0.86
UPF1-202ENST00000594243 YPEL4Q96NS1 127 aa9.71□□□□□ -0.86
UPF1-202ENST00000594243 C2orf88Q9BSF0 95 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms