RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 TMEM101Q96IK0 257 aa13.3□□□□□ -0.28
DDX39A-207ENST00000588542 UBE2D4Q9Y2X8 147 aa13.3□□□□□ -0.28
DDX39A-207ENST00000588542 APOBP04114 4563 aaKnown RBP13.3□□□□□ -0.28
DDX39A-207ENST00000588542 LOC389332A0A1B0GUA5 103 aa13.29□□□□□ -0.28
DDX39A-207ENST00000588542 OR5A1Q8NGJ0 315 aa13.29□□□□□ -0.28
DDX39A-207ENST00000588542 MAP1LC3AQ9H492 121 aa13.29□□□□□ -0.28
DDX39A-207ENST00000588542 CDC42SE2Q9NRR3 84 aa13.29□□□□□ -0.28
DDX39A-207ENST00000588542 TGIF2-C20orf24A0A0A6YYL0 155 aa13.28□□□□□ -0.28
DDX39A-207ENST00000588542 IGKV3OR2-268A0A0C4DH90 116 aa13.28□□□□□ -0.28
DDX39A-207ENST00000588542 RPL39P62891 51 aaKnown RBP13.28□□□□□ -0.28
DDX39A-207ENST00000588542 COX19Q49B96 90 aa13.28□□□□□ -0.28
DDX39A-207ENST00000588542 NTN5Q8WTR8 489 aaPredicted RBP13.28□□□□□ -0.28
DDX39A-207ENST00000588542 CSDC2Q9Y534 153 aaKnown RBP13.28□□□□□ -0.28
DDX39A-207ENST00000588542 RYR1P21817 5038 aa13.27□□□□□ -0.29
DDX39A-207ENST00000588542 Q8N8P6 123 aa13.27□□□□□ -0.29
DDX39A-207ENST00000588542 HERC2O95714 4834 aa13.26□□□□□ -0.29
DDX39A-207ENST00000588542 ZNF664Q8N3J9 261 aa13.26□□□□□ -0.29
DDX39A-207ENST00000588542 TMEM18Q96B42 140 aa13.26□□□□□ -0.29
DDX39A-207ENST00000588542 TIMM21Q9BVV7 248 aa13.26□□□□□ -0.29
DDX39A-207ENST00000588542 MT-ND6P03923 174 aa13.25□□□□□ -0.29
DDX39A-207ENST00000588542 RAB5AP20339 215 aa13.25□□□□□ -0.29
DDX39A-207ENST00000588542 YPEL4Q96NS1 127 aa13.25□□□□□ -0.29
DDX39A-207ENST00000588542 MRPL18Q9H0U6 180 aaKnown RBP13.25□□□□□ -0.29
DDX39A-207ENST00000588542 DNAH8Q96JB1 4490 aa13.25□□□□□ -0.29
DDX39A-207ENST00000588542 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.24□□□□□ -0.29
DDX39A-207ENST00000588542 IGLV5-52A0A0A0MRZ9 124 aa13.24□□□□□ -0.29
DDX39A-207ENST00000588542 USP17L23D6RBM5 183 aa13.24□□□□□ -0.29
DDX39A-207ENST00000588542 SMAGPQ0VAQ4 97 aa13.24□□□□□ -0.29
DDX39A-207ENST00000588542 DGAT2L7PQ6IED9 249 aa13.24□□□□□ -0.29
DDX39A-207ENST00000588542 FAM104AQ969W3 186 aa13.24□□□□□ -0.29
DDX39A-207ENST00000588542 ALKBH7Q9BT30 221 aaPredicted RBP13.24□□□□□ -0.29
DDX39A-207ENST00000588542 LINC00959A0A1B0GUT2 108 aa13.23□□□□□ -0.29
DDX39A-207ENST00000588542 KRTAP10-1P60331 282 aa13.23□□□□□ -0.29
DDX39A-207ENST00000588542 Q6ZUT4 128 aa13.23□□□□□ -0.29
DDX39A-207ENST00000588542 CHCHD10Q8WYQ3 142 aaPredicted RBP13.23□□□□□ -0.29
DDX39A-207ENST00000588542 HSPG2P98160 4391 aa13.23□□□□□ -0.29
DDX39A-207ENST00000588542 GAGE12HA6NDE8 117 aa13.22□□□□□ -0.29
DDX39A-207ENST00000588542 IFI27P40305 119 aaPredicted RBP13.22□□□□□ -0.29
DDX39A-207ENST00000588542 FABP9Q0Z7S8 132 aa13.22□□□□□ -0.29
DDX39A-207ENST00000588542 RNASE13Q5GAN3 156 aaKnown RBP13.22□□□□□ -0.29
DDX39A-207ENST00000588542 NXT2Q9NPJ8 142 aaKnown RBP13.22□□□□□ -0.29
DDX39A-207ENST00000588542 GCSHP23434 173 aa13.21□□□□□ -0.29
DDX39A-207ENST00000588542 C14orf177Q52M58 125 aa13.21□□□□□ -0.29
DDX39A-207ENST00000588542 SPANXA1Q9NS26 97 aa13.2□□□□□ -0.3
DDX39A-207ENST00000588542 K7EMI3 77 aa13.19□□□□□ -0.3
DDX39A-207ENST00000588542 PRSS1P07477 247 aa13.19□□□□□ -0.3
DDX39A-207ENST00000588542 FOXI1Q12951 378 aa13.19□□□□□ -0.3
DDX39A-207ENST00000588542 OPRPNQ99935 248 aaPredicted RBP13.19□□□□□ -0.3
DDX39A-207ENST00000588542 TRAPPC1Q9Y5R8 145 aa13.19□□□□□ -0.3
DDX39A-207ENST00000588542 CCL25O15444 150 aa13.18□□□□□ -0.3
DDX39A-207ENST00000588542 CDK2AP2O75956 126 aa13.18□□□□□ -0.3
DDX39A-207ENST00000588542 MRPS36P82909 103 aaKnown RBP13.18□□□□□ -0.3
DDX39A-207ENST00000588542 ORMDL2Q53FV1 153 aa13.18□□□□□ -0.3
DDX39A-207ENST00000588542 CBLN2Q8IUK8 224 aa13.18□□□□□ -0.3
DDX39A-207ENST00000588542 XCL1P47992 114 aa13.17□□□□□ -0.3
DDX39A-207ENST00000588542 SS18Q15532 418 aa13.17□□□□□ -0.3
DDX39A-207ENST00000588542 PYGO1Q9Y3Y4 419 aa13.17□□□□□ -0.3
DDX39A-207ENST00000588542 C2orf66Q6UXQ4 117 aa13.16□□□□□ -0.3
DDX39A-207ENST00000588542 C15orf56Q8N910 161 aa13.16□□□□□ -0.3
DDX39A-207ENST00000588542 SMCO4Q9NRQ5 59 aa13.16□□□□□ -0.3
DDX39A-207ENST00000588542 LINC01546A6NGU7 62 aa13.15□□□□□ -0.3
DDX39A-207ENST00000588542 PRSS3P2Q8NHM4 247 aa13.15□□□□□ -0.3
DDX39A-207ENST00000588542 CYSLTR1Q9Y271 337 aa13.15□□□□□ -0.3
DDX39A-207ENST00000588542 IGLV4-3A0A075B6K6 122 aa13.14□□□□□ -0.31
DDX39A-207ENST00000588542 TRAV13-1A0A0B4J241 112 aa13.14□□□□□ -0.31
DDX39A-207ENST00000588542 C1orf196B1AJZ1 125 aa13.14□□□□□ -0.31
DDX39A-207ENST00000588542 LINC01620Q4KN68 170 aa13.14□□□□□ -0.31
DDX39A-207ENST00000588542 CD164L2Q6UWJ8 174 aa13.14□□□□□ -0.31
DDX39A-207ENST00000588542 hDV102S1A0JD36 115 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 IGIPA6NJ69 53 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 XGP55808 180 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 CFAP161Q6P656 301 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 C18orf32Q8TCD1 76 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 TMEM141Q96I45 108 aa13.11□□□□□ -0.31
DDX39A-207ENST00000588542 SLPIP03973 132 aa13.1□□□□□ -0.31
DDX39A-207ENST00000588542 TOMM6Q96B49 74 aa13.1□□□□□ -0.31
DDX39A-207ENST00000588542 KRTAP17-1Q9BYP8 105 aa13.1□□□□□ -0.31
DDX39A-207ENST00000588542 FAM30AQ9NZY2 134 aa13.1□□□□□ -0.31
DDX39A-207ENST00000588542 IFITM10A6NMD0 228 aa13.09□□□□□ -0.31
DDX39A-207ENST00000588542 URB1-AS1Q96HZ7 61 aa13.09□□□□□ -0.31
DDX39A-207ENST00000588542 GVQW2A0A096LPI5 108 aaPredicted RBP13.08□□□□□ -0.32
DDX39A-207ENST00000588542 NPSP0C0P6 89 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 G0S2P27469 103 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 CNBPP62633 177 aaKnown RBP13.08□□□□□ -0.32
DDX39A-207ENST00000588542 HIGD2BQ4VC39 106 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 LINC00173Q6ZV60 143 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 FA2HQ7L5A8 372 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 C9orf163Q8N9P6 203 aa13.08□□□□□ -0.32
DDX39A-207ENST00000588542 ZC2HC1BQ5TFG8 222 aa13.07□□□□□ -0.32
DDX39A-207ENST00000588542 Q6ZSA8 131 aa13.07□□□□□ -0.32
DDX39A-207ENST00000588542 AMELXQ99217 191 aa13.07□□□□□ -0.32
DDX39A-207ENST00000588542 IGHV1-58A0A0C4DH39 117 aa13.06□□□□□ -0.32
DDX39A-207ENST00000588542 TEX43Q6ZNM6 134 aa13.06□□□□□ -0.32
DDX39A-207ENST00000588542 TIMM17AQ99595 171 aa13.06□□□□□ -0.32
DDX39A-207ENST00000588542 IGHV3OR16-9A0A0B4J2B5 98 aa13.05□□□□□ -0.32
DDX39A-207ENST00000588542 COX7A2LO14548 114 aa13.05□□□□□ -0.32
DDX39A-207ENST00000588542 C5orf38Q86SI9 138 aa13.05□□□□□ -0.32
DDX39A-207ENST00000588542 AP5S1Q9NUS5 200 aa13.05□□□□□ -0.32
DDX39A-207ENST00000588542 UBE2D1P51668 147 aa13.04□□□□□ -0.32
DDX39A-207ENST00000588542 HAMPP81172 84 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 863.4 ms