RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MAJINQ3KP22 176 aa13.24□□□□□ -0.29
VPS53-216ENST00000574029 CHCHD10Q8WYQ3 142 aaPredicted RBP13.24□□□□□ -0.29
VPS53-216ENST00000574029 A0A1B0GW15 77 aa13.23□□□□□ -0.29
VPS53-216ENST00000574029 TMEM218A2RU14 115 aa13.23□□□□□ -0.29
VPS53-216ENST00000574029 NCR2O95944 276 aa13.23□□□□□ -0.29
VPS53-216ENST00000574029 IGKV2-24A0A0C4DH68 120 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 H7C423 109 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 RAB4AP20338 218 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 PRR3P79522 188 aaKnown RBP13.22□□□□□ -0.29
VPS53-216ENST00000574029 AMMECR1LQ6DCA0 310 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 ANAPC16Q96DE5 110 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 LINC01600Q96MT4 127 aa13.22□□□□□ -0.29
VPS53-216ENST00000574029 LINC00862A6NCI5 91 aa13.21□□□□□ -0.29
VPS53-216ENST00000574029 MT-ND4LP03901 98 aa13.21□□□□□ -0.29
VPS53-216ENST00000574029 STPG4Q8N801 248 aa13.21□□□□□ -0.29
VPS53-216ENST00000574029 RPL39LQ96EH5 51 aaKnown RBP13.21□□□□□ -0.29
VPS53-216ENST00000574029 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.2□□□□□ -0.3
VPS53-216ENST00000574029 TRBV6-5A0A0K0K1A5 114 aa13.2□□□□□ -0.3
VPS53-216ENST00000574029 IGKV2-29A2NJV5 120 aaPredicted RBP13.2□□□□□ -0.3
VPS53-216ENST00000574029 RNASEKQ6P5S7 137 aaKnown RBP13.2□□□□□ -0.3
VPS53-216ENST00000574029 MRAP2Q96G30 205 aa13.2□□□□□ -0.3
VPS53-216ENST00000574029 FGF6P10767 208 aa13.19□□□□□ -0.3
VPS53-216ENST00000574029 ADCYAP1P18509 176 aa13.19□□□□□ -0.3
VPS53-216ENST00000574029 FOXI1Q12951 378 aa13.19□□□□□ -0.3
VPS53-216ENST00000574029 AMN1Q8IY45 258 aa13.19□□□□□ -0.3
VPS53-216ENST00000574029 TNXBP22105 4242 aa13.19□□□□□ -0.3
VPS53-216ENST00000574029 A0A096LNI7 61 aa13.18□□□□□ -0.3
VPS53-216ENST00000574029 APCSP02743 223 aa13.18□□□□□ -0.3
VPS53-216ENST00000574029 COMMD7Q86VX2 200 aa13.18□□□□□ -0.3
VPS53-216ENST00000574029 A0A1B0GXF2 115 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 SDHAF1A6NFY7 115 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 F8W036 122 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 GAS8-AS1O95177 125 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 S100A8P05109 93 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 ZNF25P17030 456 aaPredicted RBP13.17□□□□□ -0.3
VPS53-216ENST00000574029 FAM104BQ5XKR9 115 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 OR5A1Q8NGJ0 315 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 SEC11CQ9BY50 192 aa13.17□□□□□ -0.3
VPS53-216ENST00000574029 CAMPP49913 170 aa13.16□□□□□ -0.3
VPS53-216ENST00000574029 HBBP68871 147 aa13.16□□□□□ -0.3
VPS53-216ENST00000574029 PPP1R17O96001 155 aa13.15□□□□□ -0.3
VPS53-216ENST00000574029 ATP5L2Q7Z4Y8 100 aa13.15□□□□□ -0.3
VPS53-216ENST00000574029 LINC00474Q9P2X8 69 aa13.15□□□□□ -0.3
VPS53-216ENST00000574029 I3L3M4 83 aa13.14□□□□□ -0.31
VPS53-216ENST00000574029 C10orf91Q5T1B1 145 aa13.14□□□□□ -0.31
VPS53-216ENST00000574029 MRPL54Q6P161 138 aaKnown RBP13.14□□□□□ -0.31
VPS53-216ENST00000574029 ST20Q9HBF5 79 aa13.14□□□□□ -0.31
VPS53-216ENST00000574029 A0A0J9YXV3 536 aa13.13□□□□□ -0.31
VPS53-216ENST00000574029 XCL1P47992 114 aa13.13□□□□□ -0.31
VPS53-216ENST00000574029 POLR2KP53803 58 aaKnown RBP13.13□□□□□ -0.31
VPS53-216ENST00000574029 MRPL51Q4U2R6 128 aaKnown RBP13.13□□□□□ -0.31
VPS53-216ENST00000574029 SPINK6Q6UWN8 80 aa13.13□□□□□ -0.31
VPS53-216ENST00000574029 PKIGQ9Y2B9 76 aa13.13□□□□□ -0.31
VPS53-216ENST00000574029 IGHV1-58A0A0C4DH39 117 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 LINC00959A0A1B0GUT2 108 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 CCL25O15444 150 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 ESDP10768 282 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 PMCHP20382 165 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 NRACQ8N912 160 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 TMEM101Q96IK0 257 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 BTF3L4Q96K17 158 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 IMMP2LQ96T52 175 aa13.12□□□□□ -0.31
VPS53-216ENST00000574029 TRBV27A0A0K0K1C4 114 aa13.11□□□□□ -0.31
VPS53-216ENST00000574029 KRTAP10-8P60410 259 aa13.11□□□□□ -0.31
VPS53-216ENST00000574029 ODF1Q14990 250 aa13.11□□□□□ -0.31
VPS53-216ENST00000574029 LINC00526Q96FQ7 95 aa13.11□□□□□ -0.31
VPS53-216ENST00000574029 CTDSP1Q9GZU7 261 aa13.11□□□□□ -0.31
VPS53-216ENST00000574029 SMKR1H3BMG3 65 aa13.1□□□□□ -0.31
VPS53-216ENST00000574029 CARD19Q96LW7 228 aa13.1□□□□□ -0.31
VPS53-216ENST00000574029 LRP2P98164 4655 aa13.1□□□□□ -0.31
VPS53-216ENST00000574029 TRBV24-1A0A075B6N3 115 aa13.09□□□□□ -0.31
VPS53-216ENST00000574029 TSHBP01222 138 aa13.09□□□□□ -0.31
VPS53-216ENST00000574029 SRSF9Q13242 221 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS53-216ENST00000574029 REG3GQ6UW15 175 aa13.09□□□□□ -0.31
VPS53-216ENST00000574029 CARHSP1Q9Y2V2 147 aaKnown RBP13.09□□□□□ -0.31
VPS53-216ENST00000574029 VCYO14598 125 aa13.08□□□□□ -0.32
VPS53-216ENST00000574029 CKS2P33552 79 aa13.08□□□□□ -0.32
VPS53-216ENST00000574029 C20orf78Q9BR46 151 aa13.08□□□□□ -0.32
VPS53-216ENST00000574029 PPBPP02775 128 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 SUMO2P61956 95 aaKnown RBP13.07□□□□□ -0.32
VPS53-216ENST00000574029 SS18Q15532 418 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 CD164L2Q6UWJ8 174 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 Q6ZRP5 223 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 MRPL52Q86TS9 123 aaKnown RBP13.07□□□□□ -0.32
VPS53-216ENST00000574029 CDC42SE2Q9NRR3 84 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 TMEM242Q9NWH2 141 aa13.07□□□□□ -0.32
VPS53-216ENST00000574029 RPL32P62910 135 aaKnown RBP13.06□□□□□ -0.32
VPS53-216ENST00000574029 SYCNQ0VAF6 134 aa13.06□□□□□ -0.32
VPS53-216ENST00000574029 RNF213Q63HN8 5207 aa13.05□□□□□ -0.32
VPS53-216ENST00000574029 ZNF561-AS1K7EIQ3 104 aa13.05□□□□□ -0.32
VPS53-216ENST00000574029 TRAV9-1A0A075B6T8 112 aa13.04□□□□□ -0.32
VPS53-216ENST00000574029 D6R8Y8 96 aa13.04□□□□□ -0.32
VPS53-216ENST00000574029 TNFRSF6BO95407 300 aa13.04□□□□□ -0.32
VPS53-216ENST00000574029 ZNF664Q8N3J9 261 aa13.04□□□□□ -0.32
VPS53-216ENST00000574029 C7orf77A4D0Y5 90 aa13.03□□□□□ -0.32
VPS53-216ENST00000574029 PTTG1IPP53801 180 aa13.03□□□□□ -0.32
VPS53-216ENST00000574029 TMEM136Q6ZRR5 245 aa13.02□□□□□ -0.33
VPS53-216ENST00000574029 ORMDL3Q8N138 153 aa13.02□□□□□ -0.33
VPS53-216ENST00000574029 KIR2DL4Q99706 377 aa13.02□□□□□ -0.33
VPS53-216ENST00000574029 RHEBQ15382 184 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms