RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SLC7A5P1Q8MH63 180 aa8.61□□□□□ -1.03
NEDD8-208ENST00000560427 Q8N8P6 123 aa8.61□□□□□ -1.03
NEDD8-208ENST00000560427 UBE2D4Q9Y2X8 147 aa8.61□□□□□ -1.03
NEDD8-208ENST00000560427 TGIF2-C20orf24A0A0A6YYL0 155 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 KRTAP10-2P60368 255 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 C14orf177Q52M58 125 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 ORMDL2Q53FV1 153 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 MAPKAPK5-AS1Q8N8E1 139 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 MRPL18Q9H0U6 180 aaKnown RBP8.6□□□□□ -1.03
NEDD8-208ENST00000560427 CDC42SE2Q9NRR3 84 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 SPANXA1Q9NS26 97 aa8.6□□□□□ -1.03
NEDD8-208ENST00000560427 PKHD1P08F94 4074 aa8.59□□□□□ -1.03
NEDD8-208ENST00000560427 KRTAP26-1Q6PEX3 210 aa8.59□□□□□ -1.03
NEDD8-208ENST00000560427 ZNF664Q8N3J9 261 aa8.59□□□□□ -1.03
NEDD8-208ENST00000560427 BAALCQ8WXS3 180 aa8.59□□□□□ -1.03
NEDD8-208ENST00000560427 SMCO4Q9NRQ5 59 aa8.59□□□□□ -1.03
NEDD8-208ENST00000560427 IGLV10-54A0A075B6I4 117 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 LOC389332A0A1B0GUA5 103 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 CCL25O15444 150 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 G0S2P27469 103 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 FABP9Q0Z7S8 132 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 WFDC2Q14508 124 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 KIAA1644Q3SXP7 199 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 YPEL4Q96NS1 127 aa8.58□□□□□ -1.04
NEDD8-208ENST00000560427 ALKBH7Q9BT30 221 aaPredicted RBP8.58□□□□□ -1.04
NEDD8-208ENST00000560427 MRPS36P82909 103 aaKnown RBP8.57□□□□□ -1.04
NEDD8-208ENST00000560427 PYGO1Q9Y3Y4 419 aa8.57□□□□□ -1.04
NEDD8-208ENST00000560427 TRAPPC1Q9Y5R8 145 aa8.57□□□□□ -1.04
NEDD8-208ENST00000560427 IGLV5-52A0A0A0MRZ9 124 aa8.56□□□□□ -1.04
NEDD8-208ENST00000560427 LECT2O14960 151 aa8.56□□□□□ -1.04
NEDD8-208ENST00000560427 NPSP0C0P6 89 aa8.56□□□□□ -1.04
NEDD8-208ENST00000560427 IFI27P40305 119 aaPredicted RBP8.56□□□□□ -1.04
NEDD8-208ENST00000560427 RPL39P62891 51 aaKnown RBP8.56□□□□□ -1.04
NEDD8-208ENST00000560427 SS18Q15532 418 aa8.56□□□□□ -1.04
NEDD8-208ENST00000560427 CHCHD10Q8WYQ3 142 aaPredicted RBP8.56□□□□□ -1.04
NEDD8-208ENST00000560427 CYSLTR1Q9Y271 337 aa8.56□□□□□ -1.04
NEDD8-208ENST00000560427 IGKV3OR2-268A0A0C4DH90 116 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 LINC00959A0A1B0GUT2 108 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 LINC01549A6NIU2 74 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 USP17L23D6RBM5 183 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 Q6ZUT4 128 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 CBLN2Q8IUK8 224 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 PRSS3P2Q8NHM4 247 aa8.55□□□□□ -1.04
NEDD8-208ENST00000560427 DYNC1H1Q14204 4646 aaKnown RBP8.54□□□□□ -1.04
NEDD8-208ENST00000560427 GAGE12HA6NDE8 117 aa8.54□□□□□ -1.04
NEDD8-208ENST00000560427 LINC01546A6NGU7 62 aa8.54□□□□□ -1.04
NEDD8-208ENST00000560427 C1orf196B1AJZ1 125 aa8.54□□□□□ -1.04
NEDD8-208ENST00000560427 CFAP161Q6P656 301 aa8.54□□□□□ -1.04
NEDD8-208ENST00000560427 C2orf66Q6UXQ4 117 aa8.54□□□□□ -1.04
NEDD8-208ENST00000560427 GCSHP23434 173 aa8.53□□□□□ -1.04
NEDD8-208ENST00000560427 FOXI1Q12951 378 aa8.53□□□□□ -1.04
NEDD8-208ENST00000560427 CD164L2Q6UWJ8 174 aa8.53□□□□□ -1.04
NEDD8-208ENST00000560427 CDK2AP2O75956 126 aa8.52□□□□□ -1.05
NEDD8-208ENST00000560427 FA2HQ7L5A8 372 aa8.52□□□□□ -1.05
NEDD8-208ENST00000560427 TMEM141Q96I45 108 aa8.52□□□□□ -1.05
NEDD8-208ENST00000560427 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.51□□□□□ -1.05
NEDD8-208ENST00000560427 IGLV4-3A0A075B6K6 122 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 XCL1P47992 114 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 PAPPA-AS1Q5QFB9 102 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 Q6ZN92 141 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 FAM104AQ969W3 186 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 TIMM17AQ99595 171 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 DNAH5Q8TE73 4624 aa8.51□□□□□ -1.05
NEDD8-208ENST00000560427 TRAV13-1A0A0B4J241 112 aa8.5□□□□□ -1.05
NEDD8-208ENST00000560427 RNASE13Q5GAN3 156 aaKnown RBP8.5□□□□□ -1.05
NEDD8-208ENST00000560427 C18orf32Q8TCD1 76 aa8.5□□□□□ -1.05
NEDD8-208ENST00000560427 TOMM6Q96B49 74 aa8.5□□□□□ -1.05
NEDD8-208ENST00000560427 AP5S1Q9NUS5 200 aa8.5□□□□□ -1.05
NEDD8-208ENST00000560427 GVQW2A0A096LPI5 108 aaPredicted RBP8.49□□□□□ -1.05
NEDD8-208ENST00000560427 hDV102S1A0JD36 115 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 IGIPA6NJ69 53 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 IFITM10A6NMD0 228 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 PRSS1P07477 247 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 FUSP35637 526 aaKnown RBP eCLIP8.49□□□□□ -1.05
NEDD8-208ENST00000560427 RAB5BP61020 215 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 CNBPP62633 177 aaKnown RBP8.49□□□□□ -1.05
NEDD8-208ENST00000560427 TEX43Q6ZNM6 134 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 C15orf56Q8N910 161 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 C2orf88Q9BSF0 95 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 LRP1BQ9NZR2 4599 aa8.49□□□□□ -1.05
NEDD8-208ENST00000560427 IGHV1-58A0A0C4DH39 117 aa8.48□□□□□ -1.05
NEDD8-208ENST00000560427 COX7A2LO14548 114 aa8.48□□□□□ -1.05
NEDD8-208ENST00000560427 KRTAP10-1P60331 282 aa8.48□□□□□ -1.05
NEDD8-208ENST00000560427 ERASQ7Z444 233 aa8.48□□□□□ -1.05
NEDD8-208ENST00000560427 OPRPNQ99935 248 aaPredicted RBP8.48□□□□□ -1.05
NEDD8-208ENST00000560427 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.47□□□□□ -1.05
NEDD8-208ENST00000560427 LINC00614P0C842 121 aa8.47□□□□□ -1.05
NEDD8-208ENST00000560427 AMELXQ99217 191 aa8.47□□□□□ -1.05
NEDD8-208ENST00000560427 VCX2Q9H322 139 aa8.47□□□□□ -1.05
NEDD8-208ENST00000560427 MALP21145 153 aa8.46□□□□□ -1.06
NEDD8-208ENST00000560427 SCGB3A1Q96QR1 104 aa8.46□□□□□ -1.06
NEDD8-208ENST00000560427 KIAA1109Q2LD37 5005 aa8.46□□□□□ -1.06
NEDD8-208ENST00000560427 IGHV3OR16-9A0A0B4J2B5 98 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 COLCA2A8K830 154 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 APOMO95445 188 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 UBE2D1P51668 147 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 SEC11AP67812 179 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 FAM19A3Q7Z5A8 133 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 C9orf163Q8N9P6 203 aa8.45□□□□□ -1.06
NEDD8-208ENST00000560427 HBDP02042 147 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms