RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TRAV26-2A0A0B4J265 109 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 HBDP02042 147 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 MGPP08493 103 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 DPH3P1Q9H4G8 78 aa9.66□□□□□ -0.86
SHMT2-217ENST00000555116 NXT2Q9NPJ8 142 aaKnown RBP9.66□□□□□ -0.86
SHMT2-217ENST00000555116 TRAV8-6A0A0B4J262 113 aa9.65□□□□□ -0.86
SHMT2-217ENST00000555116 M0QY20 66 aa9.65□□□□□ -0.86
SHMT2-217ENST00000555116 NPSP0C0P6 89 aa9.65□□□□□ -0.86
SHMT2-217ENST00000555116 SUMO4Q6EEV6 95 aa9.65□□□□□ -0.86
SHMT2-217ENST00000555116 MRAP2Q96G30 205 aa9.65□□□□□ -0.86
SHMT2-217ENST00000555116 PRSS47A8MTI9 375 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 ORAOV1Q8WV07 137 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 IGHV3-38A0A0C4DH36 116 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 PRSS29PA6NIE9 313 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 LINC01545Q5VT33 79 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 Q8N8P6 123 aa9.64□□□□□ -0.87
SHMT2-217ENST00000555116 EPPK1P58107 5090 aaKnown RBP9.64□□□□□ -0.87
SHMT2-217ENST00000555116 FAT2Q9NYQ8 4349 aa9.63□□□□□ -0.87
SHMT2-217ENST00000555116 H0Y8G0 127 aa9.63□□□□□ -0.87
SHMT2-217ENST00000555116 LINC01556Q5JQF7 62 aa9.63□□□□□ -0.87
SHMT2-217ENST00000555116 K7EP13 123 aa9.62□□□□□ -0.87
SHMT2-217ENST00000555116 A0A1B0GVY2 172 aa9.62□□□□□ -0.87
SHMT2-217ENST00000555116 H7C1H1 209 aa9.62□□□□□ -0.87
SHMT2-217ENST00000555116 FCER1GP30273 86 aa9.62□□□□□ -0.87
SHMT2-217ENST00000555116 DNAJC30Q96LL9 226 aa9.62□□□□□ -0.87
SHMT2-217ENST00000555116 Q6ZRN7 208 aaPredicted RBP9.6□□□□□ -0.87
SHMT2-217ENST00000555116 STPG4Q8N801 248 aa9.6□□□□□ -0.87
SHMT2-217ENST00000555116 PMCHL2Q9BQD1 86 aa9.6□□□□□ -0.87
SHMT2-217ENST00000555116 TNFRSF18Q9Y5U5 241 aa9.6□□□□□ -0.87
SHMT2-217ENST00000555116 hDV102S1A0JD36 115 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 TNP2Q05952 138 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 Q8N3U1 123 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 C10orf126Q8N4M7 172 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 IFI27L1Q96BM0 104 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 IGHV3-30P01768 117 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 IGHV3-33P01772 117 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 IGHV3-30-3P0DP02 117 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 IGHV3-30-5P0DP03 117 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 PTTG1IPP53801 180 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 DAZ4Q86SG3 579 aaKnown RBP9.59□□□□□ -0.87
SHMT2-217ENST00000555116 C20orf78Q9BR46 151 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 SMIM2Q9BVW6 85 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 ST20Q9HBF5 79 aa9.59□□□□□ -0.87
SHMT2-217ENST00000555116 DAZ3Q9NR90 486 aaKnown RBP9.59□□□□□ -0.87
SHMT2-217ENST00000555116 TRBV6-8A0A0A6YYG3 113 aa9.58□□□□□ -0.88
SHMT2-217ENST00000555116 SUMO2P61956 95 aaKnown RBP9.58□□□□□ -0.88
SHMT2-217ENST00000555116 LAGE3Q14657 143 aa9.58□□□□□ -0.88
SHMT2-217ENST00000555116 NTM-AS1Q6ZSK4 140 aa9.58□□□□□ -0.88
SHMT2-217ENST00000555116 RPL39LQ96EH5 51 aaKnown RBP9.58□□□□□ -0.88
SHMT2-217ENST00000555116 IBA57-AS1B1ANH7 110 aa9.57□□□□□ -0.88
SHMT2-217ENST00000555116 HSBP1L1C9JCN9 74 aa9.57□□□□□ -0.88
SHMT2-217ENST00000555116 HINT1P49773 126 aaPredicted RBP9.57□□□□□ -0.88
SHMT2-217ENST00000555116 HECTD4Q9Y4D8 3996 aa9.57□□□□□ -0.88
SHMT2-217ENST00000555116 COX11Q9Y6N1 276 aa9.57□□□□□ -0.88
SHMT2-217ENST00000555116 PPP1R17O96001 155 aa9.56□□□□□ -0.88
SHMT2-217ENST00000555116 UBE2V1Q13404 147 aa9.56□□□□□ -0.88
SHMT2-217ENST00000555116 TMEM97Q5BJF2 176 aa9.56□□□□□ -0.88
SHMT2-217ENST00000555116 NFE4Q86UQ8 179 aa9.56□□□□□ -0.88
SHMT2-217ENST00000555116 BIRC6Q9NR09 4857 aa9.55□□□□□ -0.88
SHMT2-217ENST00000555116 PKD1P98161 4303 aa9.54□□□□□ -0.88
SHMT2-217ENST00000555116 K7EMI3 77 aa9.54□□□□□ -0.88
SHMT2-217ENST00000555116 ATP5LO75964 103 aa9.53□□□□□ -0.88
SHMT2-217ENST00000555116 ORMDL2Q53FV1 153 aa9.53□□□□□ -0.88
SHMT2-217ENST00000555116 CHCHD7Q9BUK0 85 aa9.53□□□□□ -0.88
SHMT2-217ENST00000555116 RPL32P62910 135 aaKnown RBP9.53□□□□□ -0.88
SHMT2-217ENST00000555116 SLC25A34Q6PIV7 304 aa9.53□□□□□ -0.88
SHMT2-217ENST00000555116 TRBV25-1A0A075B6N4 114 aa9.52□□□□□ -0.89
SHMT2-217ENST00000555116 PRSS1P07477 247 aa9.52□□□□□ -0.89
SHMT2-217ENST00000555116 ODF1Q14990 250 aa9.52□□□□□ -0.89
SHMT2-217ENST00000555116 CHCHD5Q9BSY4 110 aa9.52□□□□□ -0.89
SHMT2-217ENST00000555116 A0A087WX48 190 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 TRBV6-5A0A0K0K1A5 114 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 CCL25O15444 150 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 POLR2KP53803 58 aaKnown RBP9.51□□□□□ -0.89
SHMT2-217ENST00000555116 DEFB104AQ8WTQ1 72 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 Q9HAA7 133 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 TMEM262E9PQX1 116 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 MPV17L2Q567V2 206 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 TOMM6Q96B49 74 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 TP73-AS1Q9UF72 201 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 KLK12Q9UKR0 248 aa9.51□□□□□ -0.89
SHMT2-217ENST00000555116 DNAH11Q96DT5 4516 aa9.5□□□□□ -0.89
SHMT2-217ENST00000555116 SDHAF1A6NFY7 115 aa9.5□□□□□ -0.89
SHMT2-217ENST00000555116 COTL1Q14019 142 aa9.5□□□□□ -0.89
SHMT2-217ENST00000555116 ANKRD39Q53RE8 183 aa9.5□□□□□ -0.89
SHMT2-217ENST00000555116 PKHD1P08F94 4074 aa9.5□□□□□ -0.89
SHMT2-217ENST00000555116 TRAV8-3A0A0A6YYJ7 113 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 COX8AP10176 69 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 GAGE6Q13070 117 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 TMEM243Q9BU79 118 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-217ENST00000555116 VCYO14598 125 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 PCP4P48539 62 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 VAMP3Q15836 100 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 SCGB3A1Q96QR1 104 aa9.49□□□□□ -0.89
SHMT2-217ENST00000555116 RBX1P62877 108 aa9.48□□□□□ -0.89
SHMT2-217ENST00000555116 C2orf66Q6UXQ4 117 aa9.48□□□□□ -0.89
SHMT2-217ENST00000555116 A0A087WTM6 91 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 TRBV27A0A0K0K1C4 114 aa9.47□□□□□ -0.89
SHMT2-217ENST00000555116 I3L3M4 83 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms