RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 DEFB104AQ8WTQ1 72 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 C4orf3Q8WVX3 66 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 COPS9Q8WXC6 57 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 FAM104AQ969W3 186 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 VSIG2Q96IQ7 327 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 CARD19Q96LW7 228 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 LINC01587Q99440 93 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 CHCHD7Q9BUK0 85 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 NDUFA12Q9UI09 145 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 UBE2D4Q9Y2X8 147 aa4.32□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-45A0A087WSX0 123 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-52A0A0A0MRZ9 124 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1BA6NDE4 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1EA6NEQ0 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 COX6CP09669 75 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 RBMY1DP0C7P1 496 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV4-31P0DP07 118 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 CIRBPQ14011 172 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 MIAQ16674 131 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DEFB114Q30KQ6 69 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 ZFAND6Q6FIF0 208 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 SFTA2Q6UW10 78 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 FAM19A3Q7Z5A8 133 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 ANKRD29Q8N6D5 301 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 C11orf72Q8NBR9 251 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DYNLRB2Q8TF09 96 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 LITAFQ99732 161 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 GEMIN7Q9H840 131 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 DCHS1Q96JQ0 3298 aa4.31□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV3-73A0A0B4J1V6 119 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TRBV10-1A0A0K0K1A3 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TRBV10-2A0A0K0K1G8 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 C9JAW5 83 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 SPINK8P0C7L1 97 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 HTN1P15515 57 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 RPL13AP40429 203 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 Q1RN00 199 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 LINC01620Q4KN68 170 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 TMEM61Q8N0U2 210 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 PPDPFQ9H3Y8 114 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 CSDC2Q9Y534 153 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 CEP295Q9C0D2 2601 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 ATRXP46100 2492 aa4.3□□□□□ -1.72
CHMP4A-210ENST00000552620 AKAP6Q13023 2319 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 SPTAN1Q13813 2472 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 IGLV5-37A0A075B6J1 123 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 IGHV3-64A0A075B6Q5 118 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 H3BT86 120 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 NDUFA1O15239 70 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 CKS1BP61024 79 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 HERVK_113P63121 156 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ2Q13117 558 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 Q6ZUT4 128 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 Q75L30 129 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ4Q86SG3 579 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 DAZ3Q9NR90 486 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.29□□□□□ -1.723e-10■□□□□ 8.6
CHMP4A-210ENST00000552620 IGF2RP11717 2491 aa4.29□□□□□ -1.72
CHMP4A-210ENST00000552620 TRAV8-3A0A0A6YYJ7 113 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 H7C2G1 150 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 RPL36AP83881 106 aaKnown RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 MRPL23Q16540 153 aaKnown RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 DEFB113Q30KQ7 82 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 ADAMTSL4-AS1Q5T5F5 129 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 CEMP1Q6PRD7 247 aaPredicted RBP4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 NRGNQ92686 78 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 TMEM101Q96IK0 257 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 ICOSQ9Y6W8 199 aa4.28□□□□□ -1.72
CHMP4A-210ENST00000552620 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 TRAV4A0A0B4J268 109 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 IGKV2-29A2NJV5 120 aaPredicted RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 F8WDY8 70 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 H7C423 109 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 MT-ATP8P03928 68 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 XGP55808 180 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 HERV-K104P63124 156 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DEFB136Q30KP8 78 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DEFB121Q5J5C9 76 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 C2orf82Q6UX34 121 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 C18orf65Q6ZTR6 163 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 STHQ8IWL8 128 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 MAPK1IP1LQ8NDC0 245 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 CITED1Q99966 193 aa4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 PRRC2AP48634 2157 aaKnown RBP4.27□□□□□ -1.73
CHMP4A-210ENST00000552620 DOPEY2Q9Y3R5 2298 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 TRAV8-4A0A0B4J246 113 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 K7EQD1 137 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 LST1O00453 97 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 RNASE13Q5GAN3 156 aaKnown RBP4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 LINC00242Q5T6M2 205 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 Q6Q795 121 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 C1orf158Q8N1D5 194 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 CDKN2A-AS1Q9UH64 79 aa4.26□□□□□ -1.73
CHMP4A-210ENST00000552620 CSMD1Q96PZ7 3565 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 ASH1LQ9NR48 2969 aaKnown RBP4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 IGHV3OR16-12A0A075B7B8 117 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 TRGV1A0A0A0MS02 117 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 IGHV3-38A0A0C4DH36 116 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 FAM240AA0A1B0GVK7 77 aa4.25□□□□□ -1.73
CHMP4A-210ENST00000552620 PRM2P04554 102 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms