RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NFE4Q86UQ8 179 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 MXRA5Q9NR99 2828 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 TMEM126AQ9H061 195 aa4.11□□□□□ -1.75
LIMA1-203ENST00000547825 A0A1B0GX51 115 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 MRPS12O15235 138 aaKnown RBP4.1□□□□□ -1.75
LIMA1-203ENST00000547825 TRACP01848 142 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 STHQ8IWL8 128 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 C20orf173Q96LM9 149 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 DNHD1Q96M86 4753 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 INS-IGF2F8WCM5 200 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 KRTAP10-9P60411 292 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 RPL36AP83881 106 aaKnown RBP4.1□□□□□ -1.75
LIMA1-203ENST00000547825 CLPSL2Q6UWE3 100 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 RPL36ALQ969Q0 106 aaKnown RBP4.1□□□□□ -1.75
LIMA1-203ENST00000547825 SMAD5-AS1Q9Y6J3 95 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 TRBV10-2A0A0K0K1G8 114 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 LGALS9O00182 355 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 IGHV3-30-3P0DP02 117 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 DEFB130BP0DP73 79 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 DEFB130AP0DP74 79 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 RPL35AP18077 110 aaKnown RBP4.1□□□□□ -1.75
LIMA1-203ENST00000547825 S100A7L2Q5SY68 101 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 Q6ZSV7 163 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 Q8N9W7 124 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 NEXN-AS1Q8NBZ9 246 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 CCL19Q99731 98 aa4.1□□□□□ -1.75
LIMA1-203ENST00000547825 OOSP1A8MZH6 123 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 RPL32P62910 135 aaKnown RBP4.09□□□□□ -1.75
LIMA1-203ENST00000547825 RHOHQ15669 191 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 A0A096LPF7 62 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 PRM2P04554 102 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 DEFB136Q30KP8 78 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 TMEM86BQ8N661 226 aa4.09□□□□□ -1.75
LIMA1-203ENST00000547825 TRBV7-3A0A075B6L6 115 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 SOCS3O14543 225 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV3-33P01772 117 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 ATP5G1P05496 136 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 INAFM2P0DMQ5 153 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 C11orf71Q6IPW1 123 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 C5orf38Q86SI9 138 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 SLC25A29Q8N8R3 303 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 ATP6V0E2Q8NHE4 81 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 U3KQK5 164 aa4.09□□□□□ -1.76
LIMA1-203ENST00000547825 CRLF1O75462 422 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 IGHG4P01861 327 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 PRB2P02812 416 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-203ENST00000547825 NRACQ8N912 160 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV1-69DA0A0B4J2H0 117 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 ZNF415Q09FC8 603 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 PRR9Q5T870 116 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 TMEM190Q8WZ59 177 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 USMG5Q96IX5 58 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 MUC4Q99102 2169 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 A0A0J9YXY3 114 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 FAM223BA6NKX1 122 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 NDUFA4O00483 81 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 SDIM1Q6ZPB5 146 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 FAM223AQ8IWN6 122 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 C8orf31Q8N9H6 132 aa4.08□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV7-4-1A0A0J9YVY3 117 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 TRBV6-1A0A0K0K1D8 114 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 CENPVL3A0A0U1RRI6 287 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 PROK1P58294 105 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 KRTAP1-1Q07627 177 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 C9orf47Q6ZRZ4 202 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 APRG1Q8IVJ8 170 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 ZNF580Q9UK33 172 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 hADV29S1A0JD25 119 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 ZNF22P17026 224 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-203ENST00000547825 ODF3L2Q3SX64 289 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 NPBQ8NG41 125 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 LINC00574Q9H8X3 128 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 MAP6D1Q9H9H5 199 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 C14orf132Q9NPU4 83 aa4.07□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV3-30P01768 117 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 CRYGBP07316 175 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV3-30-5P0DP03 117 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 C20orf203Q8NBC4 194 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 MRPL53Q96EL3 112 aaKnown RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 LECT2O14960 151 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 INSP01308 110 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 DAZ2Q13117 558 aaKnown RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 NSUN5P1Q3KNT7 163 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 DAZ4Q86SG3 579 aaKnown RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 PIFOQ8TCI5 191 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 TIMM17AQ99595 171 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 DAZ3Q9NR90 486 aaKnown RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 CDKN2A-AS1Q9UH64 79 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 KLK5Q9Y337 293 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 RBM3P98179 157 aaKnown RBP4.06□□□□□ -1.76
LIMA1-203ENST00000547825 MRAPQ8TCY5 172 aa4.06□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV1-69P01742 117 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 SLPIP03973 132 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 IGHV4-38-2P0DP08 117 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 VPREB1P12018 145 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 XCL1P47992 114 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 TSPEAR-AS2P59090 65 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 PIK3CD-AS1Q5SR53 167 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 LRRC75A-AS1Q8N1F1 130 aa4.05□□□□□ -1.76
LIMA1-203ENST00000547825 SND1-IT1Q9HBX3 110 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms