RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PTPRZ1P23471 2315 aaPredicted RBP6.48□□□□□ -1.37
YBX3-208ENST00000540447 ZNF843Q8N446 348 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 KLK12Q9UKR0 248 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 Q8N9W7 124 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 HCG22E2RYF7 251 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 UBE2D4Q9Y2X8 147 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 hDV103S1A0JD37 113 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 HIGD2AQ9BW72 106 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 SPTBN2O15020 2390 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 FHL2Q14192 279 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 TMEM105Q8N8V8 129 aa6.47□□□□□ -1.37
YBX3-208ENST00000540447 IGHV4-61A0A0C4DH41 118 aa6.46□□□□□ -1.37
YBX3-208ENST00000540447 EPOPA6NHQ4 379 aa6.46□□□□□ -1.37
YBX3-208ENST00000540447 C8orf87E5RJ46 101 aa6.46□□□□□ -1.38
YBX3-208ENST00000540447 COL5A3P25940 1745 aaPredicted RBP6.46□□□□□ -1.38
YBX3-208ENST00000540447 MSMBP08118 114 aa6.46□□□□□ -1.38
YBX3-208ENST00000540447 C4orf48Q5BLP8 95 aa6.46□□□□□ -1.38
YBX3-208ENST00000540447 CHCHD10Q8WYQ3 142 aaPredicted RBP6.46□□□□□ -1.38
YBX3-208ENST00000540447 UNQ9165/PRO28630Q6UXU0 137 aa6.46□□□□□ -1.38
YBX3-208ENST00000540447 XAGE1AQ9HD64 81 aa6.46□□□□□ -1.38
YBX3-208ENST00000540447 C11orf21Q9P2W6 132 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 SMAD5-AS1Q9Y6J3 95 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 LINC01356Q8N9X3 169 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 FREM1Q5H8C1 2179 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 SPTA1P02549 2419 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 A0A096LNI7 61 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 TRBV6-4A0A1B0GX49 114 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.45□□□□□ -1.381e-6■■■■□ 20.6
YBX3-208ENST00000540447 ANAPC1Q9H1A4 1944 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 REG3AQ06141 175 aa6.45□□□□□ -1.38
YBX3-208ENST00000540447 H0Y9P7 68 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 IGLV1-47P01700 117 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 SLURP1P55000 103 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 PROK1P58294 105 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 TCF20Q9UGU0 1960 aaKnown RBP6.44□□□□□ -1.38
YBX3-208ENST00000540447 RNASE3P12724 160 aaKnown RBP6.44□□□□□ -1.38
YBX3-208ENST00000540447 C1orf229Q6ZS94 237 aaPredicted RBP6.44□□□□□ -1.38
YBX3-208ENST00000540447 LINC01548A6NM66 108 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 DEFB136Q30KP8 78 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 PCOTHQ58A44 107 aa6.44□□□□□ -1.38
YBX3-208ENST00000540447 TNFRSF13BO14836 293 aaPredicted RBP6.43□□□□□ -1.38
YBX3-208ENST00000540447 ZNF73O43830 326 aaPredicted RBP6.43□□□□□ -1.38
YBX3-208ENST00000540447 LINC00474Q9P2X8 69 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 DKK4Q9UBT3 224 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 DHRS4-AS1Q9P1J3 65 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 ZSWIM8A7E2V4 1837 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 GPHB5Q86YW7 130 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 C5orf56Q8N8D9 126 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 MED13Q9UHV7 2174 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 KTN1-AS1Q86SY8 53 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 Q9UF83 564 aa6.43□□□□□ -1.38
YBX3-208ENST00000540447 CCDC140Q96MF4 163 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 EXPH5Q8NEV8 1989 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 CACNA1GO43497 2377 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 MALRD1Q5VYJ5 2156 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 PLXNB3Q9ULL4 1909 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 PRM2P04554 102 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 LINC00575Q6W349 94 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 CREBBPQ92793 2442 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 COX17Q14061 63 aa6.42□□□□□ -1.38
YBX3-208ENST00000540447 COL6A6A6NMZ7 2263 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 SPTAN1Q13813 2472 aaKnown RBP6.41□□□□□ -1.38
YBX3-208ENST00000540447 M0R378 163 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 Q6ZTI0 123 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 ZNF580Q9UK33 172 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 COL4A5P29400 1685 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 TNS1Q9HBL0 1735 aaKnown RBP6.41□□□□□ -1.38
YBX3-208ENST00000540447 IGLV2-18A0A075B6J9 118 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 ABCA4P78363 2273 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 C10orf25Q5T742 122 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 PRO0255Q9UI72 69 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 SORL1Q92673 2214 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 FHL3Q13643 280 aa6.41□□□□□ -1.38
YBX3-208ENST00000540447 COL11A2P13942 1736 aaPredicted RBP6.4□□□□□ -1.38
YBX3-208ENST00000540447 CCL24O00175 119 aa6.4□□□□□ -1.38
YBX3-208ENST00000540447 PRR9Q5T870 116 aa6.4□□□□□ -1.38
YBX3-208ENST00000540447 C2orf48Q96LS8 159 aa6.4□□□□□ -1.38
YBX3-208ENST00000540447 TRBV6-8A0A0A6YYG3 113 aa6.4□□□□□ -1.39
YBX3-208ENST00000540447 SPART-AS1P0CW21 52 aa6.4□□□□□ -1.39
YBX3-208ENST00000540447 AGRNO00468 2067 aa6.4□□□□□ -1.39
YBX3-208ENST00000540447 PRR14LQ5THK1 2151 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 SMIM1B2RUZ4 78 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 ZNF706Q9Y5V0 76 aaPredicted RBP6.39□□□□□ -1.39
YBX3-208ENST00000540447 KIAA1671Q9BY89 1806 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 LINC00242Q5T6M2 205 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 LCA10Q71F78 164 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 LINC00574Q9H8X3 128 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 PCNX3Q9H6A9 2034 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 RETNLBQ9BQ08 111 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 COL4A3Q01955 1670 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 IGKV2-28A0A075B6P5 120 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 IGKV2D-28P01615 120 aa6.39□□□□□ -1.39
YBX3-208ENST00000540447 A8MUN3 132 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 SMIM29Q86T20 159 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 ZNF106Q9H2Y7 1883 aaKnown RBP6.38□□□□□ -1.39
YBX3-208ENST00000540447 VWA8A3KMH1 1905 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 C1orf137Q5JT78 98 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 MUC7Q8TAX7 377 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 EML5Q05BV3 1969 aa6.38□□□□□ -1.39
YBX3-208ENST00000540447 C7orf65Q6ZTY9 151 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 216 ms