RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PRR4Q16378 134 aa5.8□□□□□ -1.48
USP28-205ENST00000537706 ZNF664Q8N3J9 261 aa5.8□□□□□ -1.48
USP28-205ENST00000537706 URB1-AS1Q96HZ7 61 aa5.8□□□□□ -1.48
USP28-205ENST00000537706 TRGV11A0A075B6L2 103 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 CIDEAO60543 219 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 RAB4AP20338 218 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 KRTDAPP60985 99 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 CTAG1AP78358 180 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 FAM104BQ5XKR9 115 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 FAM19A2Q8N3H0 131 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 UBE2WQ96B02 151 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 PRO1933Q9H354 126 aa5.79□□□□□ -1.48
USP28-205ENST00000537706 A0A087WYN8 130 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 IGKV3D-20A0A0C4DH25 116 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 IGHV3-16A0A0C4DH30 117 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 H7C1H1 209 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 C3orf79P0CE67 100 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 CIRBPQ14011 172 aaKnown RBP5.78□□□□□ -1.48
USP28-205ENST00000537706 PRR9Q5T870 116 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 SDIM1Q6ZPB5 146 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 ZFAND2AQ8N6M9 145 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 FAM19A4Q96LR4 140 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 TMEM191AQ9H0A3 160 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 C11orf21Q9P2W6 132 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 KLK12Q9UKR0 248 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 IGHV1-24A0A0C4DH33 117 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 USP17L23D6RBM5 183 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 OR5AL1P0C617 328 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 TWIST1Q15672 202 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 AMN1Q8IY45 258 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 ORMDL3Q8N138 153 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 Q8N3U1 123 aa5.78□□□□□ -1.48
USP28-205ENST00000537706 TRAV21A0A0B4J279 112 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 TRBV6-4A0A1B0GX49 114 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 D6R8Y8 96 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 SNAI2O43623 268 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 LINC00614P0C842 121 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 MRPL51Q4U2R6 128 aaKnown RBP5.77□□□□□ -1.49
USP28-205ENST00000537706 VAMP8Q9BV40 100 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 AP5S1Q9NUS5 200 aa5.77□□□□□ -1.49
USP28-205ENST00000537706 LPAP08519 4548 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 IGHV3-64A0A075B6Q5 118 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 M0R2P5 195 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 CRPP02741 224 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 PPBPP02775 128 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 CACNG7P62955 275 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 Q6ZQT7 251 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 SLC25A29Q8N8R3 303 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 PRELID3AQ96N28 172 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 PSORS1C2Q9UIG4 136 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 LAMTOR2Q9Y2Q5 125 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 A0A087WX48 190 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 MUC21A0A0G2JKD1 596 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 MUC21A0A140T8X8 626 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 PRSS1P07477 247 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 MUC21Q5SSG8 566 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 FA2HQ7L5A8 372 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 CHCHD7Q9BUK0 85 aa5.76□□□□□ -1.49
USP28-205ENST00000537706 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.75□□□□□ -1.49
USP28-205ENST00000537706 PMCHL1Q16048 86 aa5.75□□□□□ -1.49
USP28-205ENST00000537706 FAM159AQ6UWV7 190 aa5.75□□□□□ -1.49
USP28-205ENST00000537706 OR10AG1Q8NH19 301 aa5.75□□□□□ -1.49
USP28-205ENST00000537706 PLAC8Q9NZF1 115 aa5.75□□□□□ -1.49
USP28-205ENST00000537706 HSPB8Q9UJY1 196 aa5.75□□□□□ -1.49
USP28-205ENST00000537706 H3BVH4 76 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 LEPROTL1O95214 131 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 CKS2P33552 79 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 SMIM15Q7Z3B0 74 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 PRSS3P2Q8NHM4 247 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 C14orf144Q96I85 54 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 PAM16Q9Y3D7 125 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 C20orf202A1L168 122 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 NPYP01303 97 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 SSTP61278 116 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 SPACA4Q8TDM5 124 aa5.74□□□□□ -1.49
USP28-205ENST00000537706 LINC01546A6NGU7 62 aa5.73□□□□□ -1.49
USP28-205ENST00000537706 SYS1-DBNDD2H3BUS1 97 aa5.73□□□□□ -1.49
USP28-205ENST00000537706 NCR2O95944 276 aa5.73□□□□□ -1.49
USP28-205ENST00000537706 IFI27P40305 119 aaPredicted RBP5.73□□□□□ -1.49
USP28-205ENST00000537706 SPANXN1Q5VSR9 72 aa5.73□□□□□ -1.49
USP28-205ENST00000537706 MAP1LC3AQ9H492 121 aa5.73□□□□□ -1.49
USP28-205ENST00000537706 SMKR1H3BMG3 65 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 PET117Q6UWS5 81 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 LINC00173Q6ZV60 143 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 MRPL52Q86TS9 123 aaKnown RBP5.72□□□□□ -1.49
USP28-205ENST00000537706 MAP1LC3CQ9BXW4 147 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 A0A096LNJ9 63 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 TNFRSF6BO95407 300 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 S100A4P26447 101 aaKnown RBP5.72□□□□□ -1.49
USP28-205ENST00000537706 SPATA45Q537H7 98 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 LBHQ53QV2 105 aaPredicted RBP5.72□□□□□ -1.49
USP28-205ENST00000537706 MRAP2Q96G30 205 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 DNAJC30Q96LL9 226 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 MIEN1Q9BRT3 115 aa5.72□□□□□ -1.49
USP28-205ENST00000537706 NXT2Q9NPJ8 142 aaKnown RBP5.72□□□□□ -1.49
USP28-205ENST00000537706 LOC389332A0A1B0GUA5 103 aa5.71□□□□□ -1.5
USP28-205ENST00000537706 GAGE12JA6NER3 117 aa5.71□□□□□ -1.5
USP28-205ENST00000537706 HBDP02042 147 aa5.71□□□□□ -1.5
USP28-205ENST00000537706 GAGE1Q13065 139 aa5.71□□□□□ -1.5
USP28-205ENST00000537706 GAGE4Q13068 117 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms