RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 TMEM101Q96IK0 257 aa10.47□□□□□ -0.73
ECHDC1-220ENST00000528402 GEMIN7Q9H840 131 aaKnown RBP10.47□□□□□ -0.73
ECHDC1-220ENST00000528402 UBE2L6O14933 153 aa10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 MIFP14174 115 aa10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 CEMP1Q6PRD7 247 aaPredicted RBP10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 NTM-AS1Q6ZSK4 140 aa10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 Q6ZUT4 128 aa10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 SPATA3Q8NHX4 192 aa10.46□□□□□ -0.74
ECHDC1-220ENST00000528402 IGLV5-45A0A087WSX0 123 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 IGHV1-58A0A0C4DH39 117 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 A0A0J9YY99 117 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 FXYD2P54710 66 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 HERVK_113P63121 156 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 SRSF9Q13242 221 aaKnown RBP eCLIP10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 AMMECR1LQ6DCA0 310 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 SHISA2Q6UWI4 295 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 OR5A1Q8NGJ0 315 aa10.45□□□□□ -0.74
ECHDC1-220ENST00000528402 LINC00694P0DN24 101 aa10.44□□□□□ -0.74
ECHDC1-220ENST00000528402 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
ECHDC1-220ENST00000528402 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
ECHDC1-220ENST00000528402 PRO0255Q9UI72 69 aa10.44□□□□□ -0.74
ECHDC1-220ENST00000528402 NOTCH3Q9UM47 2321 aa10.44□□□□□ -0.74
ECHDC1-220ENST00000528402 Q6ZVH6 145 aa10.43□□□□□ -0.74
ECHDC1-220ENST00000528402 GTF2H5Q6ZYL4 71 aa10.43□□□□□ -0.74
ECHDC1-220ENST00000528402 CDC42SE2Q9NRR3 84 aa10.43□□□□□ -0.74
ECHDC1-220ENST00000528402 JMJD1CQ15652 2540 aa10.43□□□□□ -0.74
ECHDC1-220ENST00000528402 A0A1B0GWB2 263 aa10.42□□□□□ -0.74
ECHDC1-220ENST00000528402 IGHV3-30-3P0DP02 117 aa10.42□□□□□ -0.74
ECHDC1-220ENST00000528402 TRBV6-8A0A0A6YYG3 113 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 TEX48A0A1B0GUV7 120 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 TSPEAR-AS2P59090 65 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 C12orf74Q32Q52 190 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 FAM222AQ5U5X8 452 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 RNF183Q96D59 192 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 VSIG2Q96IQ7 327 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 NHP2Q9NX24 153 aaKnown RBP10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 A8MZ25 164 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 TMEM238C9JI98 176 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 DEFB135Q30KP9 77 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 KRTAP24-1Q3LI83 254 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 C3orf56Q8N813 242 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 ATP6V0E2Q8NHE4 81 aa10.41□□□□□ -0.74
ECHDC1-220ENST00000528402 GAGE10A6NGK3 116 aa10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 H3BUT2 72 aa10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 IGHV4-30-4P0DP06 118 aa10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 FABP2P12104 132 aa10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 RNASE13Q5GAN3 156 aaKnown RBP10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 SAMD5Q5TGI4 173 aa10.4□□□□□ -0.75
ECHDC1-220ENST00000528402 LOC100131303A0A0U1RQF7 123 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 A0A1W2PPM0 123 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 CCL25O15444 150 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 SPART-AS1P0CW21 52 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 LINC00242Q5T6M2 205 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 RAB37Q96AX2 223 aa10.39□□□□□ -0.75
ECHDC1-220ENST00000528402 F8P00451 2351 aa10.38□□□□□ -0.75
ECHDC1-220ENST00000528402 IGHV4-28A0A0C4DH34 117 aa10.38□□□□□ -0.75
ECHDC1-220ENST00000528402 GYPEP15421 78 aa10.38□□□□□ -0.75
ECHDC1-220ENST00000528402 DAD1P61803 113 aa10.38□□□□□ -0.75
ECHDC1-220ENST00000528402 PAX4O43316 350 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 TIMM17BO60830 172 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 IGHV3-30P01768 117 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 IGHV3-30-5P0DP03 117 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 EGFEM1PQ0D2K5 195 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 ZFAND6Q6FIF0 208 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 SH2D6Q7Z4S9 175 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 Q8NAQ8 132 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 CDKN2A-AS1Q9UH64 79 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 NDUFA12Q9UI09 145 aa10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 TEP1Q99973 2627 aaKnown RBP10.37□□□□□ -0.75
ECHDC1-220ENST00000528402 TRAV26-1A0A087WT03 109 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 A0A0J9YXY3 114 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 IGLL5B9A064 214 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 K7EP13 123 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 K7EP34 96 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 ATP5G1P05496 136 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 RPL24P83731 157 aaKnown RBP10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 CHCHD5Q9BSY4 110 aa10.36□□□□□ -0.75
ECHDC1-220ENST00000528402 IGHV3-64A0A075B6Q5 118 aa10.35□□□□□ -0.75
ECHDC1-220ENST00000528402 IGLV5-39A0A0G2JS06 123 aa10.35□□□□□ -0.75
ECHDC1-220ENST00000528402 A0A1B0GUV1 79 aa10.35□□□□□ -0.75
ECHDC1-220ENST00000528402 SPINK8P0C7L1 97 aa10.35□□□□□ -0.75
ECHDC1-220ENST00000528402 TRAV8-3A0A0A6YYJ7 113 aa10.34□□□□□ -0.75
ECHDC1-220ENST00000528402 TRAV13-1A0A0B4J241 112 aa10.34□□□□□ -0.75
ECHDC1-220ENST00000528402 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 NDUFA1O15239 70 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 COX6A2Q02221 97 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 GAGE6Q13070 117 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 CIRBPQ14011 172 aaKnown RBP10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 C10orf126Q8N4M7 172 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 SPANXDQ9BXN6 97 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 SPANXCQ9NY87 97 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 SPCS1Q9Y6A9 102 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 K7ERJ3 54 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 IFITM1P13164 125 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 COPS9Q8WXC6 57 aa10.33□□□□□ -0.76
ECHDC1-220ENST00000528402 ATRQ13535 2644 aa10.32□□□□□ -0.76
ECHDC1-220ENST00000528402 HERV-K104P63124 156 aa10.31□□□□□ -0.76
ECHDC1-220ENST00000528402 MRPL23Q16540 153 aaKnown RBP10.31□□□□□ -0.76
ECHDC1-220ENST00000528402 OXLD1Q5BKU9 147 aa10.31□□□□□ -0.76
ECHDC1-220ENST00000528402 LYRM7Q5U5X0 104 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 443 ms