RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 GNB1LQ9BYB4 327 aa14.47□□□□□ -0.09
VEGFA-217ENST00000518538 MAP1LC3AQ9H492 121 aa14.47□□□□□ -0.09
VEGFA-217ENST00000518538 CSDC2Q9Y534 153 aaKnown RBP14.47□□□□□ -0.09
VEGFA-217ENST00000518538 IGKV3OR2-268A0A0C4DH90 116 aa14.46□□□□□ -0.09
VEGFA-217ENST00000518538 COX19Q49B96 90 aa14.46□□□□□ -0.09
VEGFA-217ENST00000518538 UBE2D4Q9Y2X8 147 aa14.46□□□□□ -0.09
VEGFA-217ENST00000518538 C14orf177Q52M58 125 aa14.45□□□□□ -0.1
VEGFA-217ENST00000518538 DGAT2L7PQ6IED9 249 aa14.45□□□□□ -0.1
VEGFA-217ENST00000518538 CDC42SE2Q9NRR3 84 aa14.45□□□□□ -0.1
VEGFA-217ENST00000518538 LOC389332A0A1B0GUA5 103 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 USP17L23D6RBM5 183 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 RAB5AP20339 215 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 GCSHP23434 173 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 ZNF664Q8N3J9 261 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 TIMM21Q9BVV7 248 aa14.44□□□□□ -0.1
VEGFA-217ENST00000518538 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.43□□□□□ -0.1
VEGFA-217ENST00000518538 CDK2AP2O75956 126 aa14.43□□□□□ -0.1
VEGFA-217ENST00000518538 MT-ND6P03923 174 aa14.42□□□□□ -0.1
VEGFA-217ENST00000518538 KIAA1644Q3SXP7 199 aa14.42□□□□□ -0.1
VEGFA-217ENST00000518538 Q8N8P6 123 aa14.42□□□□□ -0.1
VEGFA-217ENST00000518538 KRTAP10-1P60331 282 aa14.41□□□□□ -0.1
VEGFA-217ENST00000518538 RPL39P62891 51 aaKnown RBP14.41□□□□□ -0.1
VEGFA-217ENST00000518538 CHCHD10Q8WYQ3 142 aaPredicted RBP14.41□□□□□ -0.1
VEGFA-217ENST00000518538 LINC00959A0A1B0GUT2 108 aa14.4□□□□□ -0.1
VEGFA-217ENST00000518538 GAGE12HA6NDE8 117 aa14.4□□□□□ -0.1
VEGFA-217ENST00000518538 SLC7A5P1Q8MH63 180 aa14.4□□□□□ -0.1
VEGFA-217ENST00000518538 TGIF2-C20orf24A0A0A6YYL0 155 aa14.39□□□□□ -0.11
VEGFA-217ENST00000518538 NXT2Q9NPJ8 142 aaKnown RBP14.39□□□□□ -0.11
VEGFA-217ENST00000518538 SPANXA1Q9NS26 97 aa14.39□□□□□ -0.11
VEGFA-217ENST00000518538 KIAA1109Q2LD37 5005 aa14.39□□□□□ -0.11
VEGFA-217ENST00000518538 LRP1BQ9NZR2 4599 aa14.39□□□□□ -0.11
VEGFA-217ENST00000518538 Q6ZUT4 128 aa14.38□□□□□ -0.11
VEGFA-217ENST00000518538 DNAH5Q8TE73 4624 aa14.38□□□□□ -0.11
VEGFA-217ENST00000518538 K7EMI3 77 aa14.37□□□□□ -0.11
VEGFA-217ENST00000518538 SS18Q15532 418 aa14.37□□□□□ -0.11
VEGFA-217ENST00000518538 MRPL18Q9H0U6 180 aaKnown RBP14.37□□□□□ -0.11
VEGFA-217ENST00000518538 CCL25O15444 150 aa14.36□□□□□ -0.11
VEGFA-217ENST00000518538 PRSS1P07477 247 aa14.36□□□□□ -0.11
VEGFA-217ENST00000518538 RNASE13Q5GAN3 156 aaKnown RBP14.36□□□□□ -0.11
VEGFA-217ENST00000518538 ALKBH7Q9BT30 221 aaPredicted RBP14.36□□□□□ -0.11
VEGFA-217ENST00000518538 IFI27P40305 119 aaPredicted RBP14.35□□□□□ -0.11
VEGFA-217ENST00000518538 XCL1P47992 114 aa14.35□□□□□ -0.11
VEGFA-217ENST00000518538 MRPS36P82909 103 aaKnown RBP14.35□□□□□ -0.11
VEGFA-217ENST00000518538 FABP9Q0Z7S8 132 aa14.35□□□□□ -0.11
VEGFA-217ENST00000518538 FOXI1Q12951 378 aa14.35□□□□□ -0.11
VEGFA-217ENST00000518538 ORMDL2Q53FV1 153 aa14.35□□□□□ -0.11
VEGFA-217ENST00000518538 FAM104AQ969W3 186 aa14.34□□□□□ -0.11
VEGFA-217ENST00000518538 CFAP161Q6P656 301 aa14.33□□□□□ -0.12
VEGFA-217ENST00000518538 PYGO1Q9Y3Y4 419 aa14.33□□□□□ -0.12
VEGFA-217ENST00000518538 C1orf196B1AJZ1 125 aa14.32□□□□□ -0.12
VEGFA-217ENST00000518538 CD164L2Q6UWJ8 174 aa14.32□□□□□ -0.12
VEGFA-217ENST00000518538 YPEL4Q96NS1 127 aa14.32□□□□□ -0.12
VEGFA-217ENST00000518538 CYSLTR1Q9Y271 337 aa14.32□□□□□ -0.12
VEGFA-217ENST00000518538 TRAPPC1Q9Y5R8 145 aa14.32□□□□□ -0.12
VEGFA-217ENST00000518538 TRAV13-1A0A0B4J241 112 aa14.31□□□□□ -0.12
VEGFA-217ENST00000518538 hDV102S1A0JD36 115 aa14.31□□□□□ -0.12
VEGFA-217ENST00000518538 C2orf66Q6UXQ4 117 aa14.31□□□□□ -0.12
VEGFA-217ENST00000518538 C15orf56Q8N910 161 aa14.31□□□□□ -0.12
VEGFA-217ENST00000518538 PRSS3P2Q8NHM4 247 aa14.31□□□□□ -0.12
VEGFA-217ENST00000518538 OPRPNQ99935 248 aaPredicted RBP14.31□□□□□ -0.12
VEGFA-217ENST00000518538 HERC2O95714 4834 aa14.29□□□□□ -0.12
VEGFA-217ENST00000518538 G0S2P27469 103 aa14.29□□□□□ -0.12
VEGFA-217ENST00000518538 LINC01620Q4KN68 170 aa14.29□□□□□ -0.12
VEGFA-217ENST00000518538 IGLV4-3A0A075B6K6 122 aa14.28□□□□□ -0.12
VEGFA-217ENST00000518538 XGP55808 180 aa14.28□□□□□ -0.12
VEGFA-217ENST00000518538 SMCO4Q9NRQ5 59 aa14.28□□□□□ -0.12
VEGFA-217ENST00000518538 AP5S1Q9NUS5 200 aa14.28□□□□□ -0.12
VEGFA-217ENST00000518538 LINC01546A6NGU7 62 aa14.27□□□□□ -0.13
VEGFA-217ENST00000518538 CNBPP62633 177 aaKnown RBP14.27□□□□□ -0.13
VEGFA-217ENST00000518538 TMEM141Q96I45 108 aa14.27□□□□□ -0.13
VEGFA-217ENST00000518538 GVQW2A0A096LPI5 108 aaPredicted RBP14.26□□□□□ -0.13
VEGFA-217ENST00000518538 IFITM10A6NMD0 228 aa14.26□□□□□ -0.13
VEGFA-217ENST00000518538 CBLN2Q8IUK8 224 aa14.26□□□□□ -0.13
VEGFA-217ENST00000518538 RYR1P21817 5038 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 IGHV1-58A0A0C4DH39 117 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 NPSP0C0P6 89 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 HIGD2BQ4VC39 106 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 Q6ZSA8 131 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 C9orf163Q8N9P6 203 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 FAM30AQ9NZY2 134 aa14.25□□□□□ -0.13
VEGFA-217ENST00000518538 APOBP04114 4563 aaKnown RBP14.24□□□□□ -0.13
VEGFA-217ENST00000518538 IGIPA6NJ69 53 aa14.24□□□□□ -0.13
VEGFA-217ENST00000518538 COX7A2LO14548 114 aa14.24□□□□□ -0.13
VEGFA-217ENST00000518538 TOMM6Q96B49 74 aa14.24□□□□□ -0.13
VEGFA-217ENST00000518538 SLPIP03973 132 aa14.23□□□□□ -0.13
VEGFA-217ENST00000518538 Q6ZN92 141 aa14.23□□□□□ -0.13
VEGFA-217ENST00000518538 TEX43Q6ZNM6 134 aa14.23□□□□□ -0.13
VEGFA-217ENST00000518538 FA2HQ7L5A8 372 aa14.23□□□□□ -0.13
VEGFA-217ENST00000518538 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.22□□□□□ -0.13
VEGFA-217ENST00000518538 C18orf32Q8TCD1 76 aa14.22□□□□□ -0.13
VEGFA-217ENST00000518538 MALP21145 153 aa14.21□□□□□ -0.13
VEGFA-217ENST00000518538 TIMM17AQ99595 171 aa14.21□□□□□ -0.13
VEGFA-217ENST00000518538 C2orf88Q9BSF0 95 aa14.21□□□□□ -0.13
VEGFA-217ENST00000518538 LINC01549A6NIU2 74 aa14.2□□□□□ -0.14
VEGFA-217ENST00000518538 LINC00173Q6ZV60 143 aa14.2□□□□□ -0.14
VEGFA-217ENST00000518538 AMELXQ99217 191 aa14.2□□□□□ -0.14
VEGFA-217ENST00000518538 VCX2Q9H322 139 aa14.2□□□□□ -0.14
VEGFA-217ENST00000518538 HSPG2P98160 4391 aa14.2□□□□□ -0.14
VEGFA-217ENST00000518538 IGHV3OR16-9A0A0B4J2B5 98 aa14.19□□□□□ -0.14
VEGFA-217ENST00000518538 HAMPP81172 84 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms