RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.62□□□□□ -1.03
NUP54-202ENST00000502850 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.62□□□□□ -1.03
NUP54-202ENST00000502850 IGKV2-29A2NJV5 120 aaPredicted RBP8.62□□□□□ -1.03
NUP54-202ENST00000502850 IGHV3-30-3P0DP02 117 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 TIRAPP58753 221 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 VPS25Q9BRG1 176 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 CSDC2Q9Y534 153 aaKnown RBP8.62□□□□□ -1.03
NUP54-202ENST00000502850 J3QR89 54 aa8.61□□□□□ -1.03
NUP54-202ENST00000502850 HIST2H2BDQ6DRA6 164 aa8.61□□□□□ -1.03
NUP54-202ENST00000502850 Q6ZUT4 128 aa8.61□□□□□ -1.03
NUP54-202ENST00000502850 A0A0B4J2C4 111 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 APOMO95445 188 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 GAGE13Q4V321 117 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 C10orf126Q8N4M7 172 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 FAM104AQ969W3 186 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 VSIG2Q96IQ7 327 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 CUBNO60494 3623 aa8.6□□□□□ -1.03
NUP54-202ENST00000502850 TRBV20-1A0A075B6N2 111 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 IGLV5-45A0A087WSX0 123 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 IGHV3-38A0A0C4DH36 116 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 A0A0J9YXY3 114 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 ADARB2-AS1A8MUL3 147 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 TSPAN13O95857 204 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 UBE2D3P61077 147 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 UBE2D2P62837 147 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 HERVK_113P63121 156 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 Q6ZTI0 123 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 FAM19A3Q7Z5A8 133 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 OVOL2Q9BRP0 275 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 GTSF1LQ9H1H1 148 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 C19orf73Q9NVV2 129 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 PRO1854Q9UHT4 67 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 STAB1Q9NY15 2570 aa8.59□□□□□ -1.03
NUP54-202ENST00000502850 TRBV6-4A0A1B0GX49 114 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 G3V4G9 280 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 H7C423 109 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 TIMM17BO60830 172 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 PF4P02776 101 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 CEMP1Q6PRD7 247 aaPredicted RBP8.58□□□□□ -1.04
NUP54-202ENST00000502850 SPANXDQ9BXN6 97 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 NOP10Q9NPE3 64 aaKnown RBP8.58□□□□□ -1.04
NUP54-202ENST00000502850 SPANXCQ9NY87 97 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 NDUFA12Q9UI09 145 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 IGHV3-64A0A075B6Q5 118 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 TRGV2A0A075B6R0 118 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 H3BMG7 143 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 GIG44P09565 113 aaPredicted RBP8.58□□□□□ -1.04
NUP54-202ENST00000502850 CFC1BP0CG36 223 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 CFC1P0CG37 223 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 ZFAND6Q6FIF0 208 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 Q9UF83 564 aa8.58□□□□□ -1.04
NUP54-202ENST00000502850 UBE2L6O14933 153 aa8.57□□□□□ -1.04
NUP54-202ENST00000502850 RPL35AP18077 110 aaKnown RBP8.57□□□□□ -1.04
NUP54-202ENST00000502850 TMEM101Q96IK0 257 aa8.57□□□□□ -1.04
NUP54-202ENST00000502850 DNHD1Q96M86 4753 aa8.57□□□□□ -1.04
NUP54-202ENST00000502850 LOC107984156A0A0G2JMH3 177 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 INSL3P51460 131 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 RNASE13Q5GAN3 156 aaKnown RBP8.56□□□□□ -1.04
NUP54-202ENST00000502850 ARL17AQ8IVW1 177 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 CSNK1G2-AS1Q8NCQ2 148 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 COPS9Q8WXC6 57 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 RNF183Q96D59 192 aa8.56□□□□□ -1.04
NUP54-202ENST00000502850 PLAC8L1A1L4L8 177 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 A4D1N5 150 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 IFITM1P13164 125 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 SBSPONQ8IVN8 264 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 TMEM243Q9BU79 118 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 FBN3Q75N90 2809 aa8.55□□□□□ -1.04
NUP54-202ENST00000502850 TRAV8-3A0A0A6YYJ7 113 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE12JA6NER3 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 NDUFA1O15239 70 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 SPINK8P0C7L1 97 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE4Q13068 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE5Q13069 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 CIRBPQ14011 172 aaKnown RBP8.54□□□□□ -1.04
NUP54-202ENST00000502850 MIAQ16674 131 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 MUSTN1Q8IVN3 82 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 LINC00482Q8N8I6 264 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 ATP6V0E2Q8NHE4 81 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 ERG28Q9UKR5 140 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 WNK1Q9H4A3 2382 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 TRGV4A0A0C4DH28 118 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE7O76087 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE12FP0CL80 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE12GP0CL81 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 GAGE12IP0CL82 117 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 WFDC10AQ9H1F0 79 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 PRO0461Q9UI25 63 aa8.54□□□□□ -1.04
NUP54-202ENST00000502850 TEX48A0A1B0GUV7 120 aa8.53□□□□□ -1.04
NUP54-202ENST00000502850 PSMB2P49721 201 aa8.53□□□□□ -1.04
NUP54-202ENST00000502850 LITAFQ99732 161 aa8.53□□□□□ -1.04
NUP54-202ENST00000502850 CDKN2A-AS1Q9UH64 79 aa8.53□□□□□ -1.04
NUP54-202ENST00000502850 IGLV5-39A0A0G2JS06 123 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 SMIM9A6NGZ8 99 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 IGHV3-33P01772 117 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 SCGB1C2P0DMR2 95 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 WFDC2Q14508 124 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 C9orf66Q5T8R8 295 aa8.52□□□□□ -1.05
NUP54-202ENST00000502850 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.52□□□□□ -1.05
NUP54-202ENST00000502850 KIR2DL5BQ8NHK3 375 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms