RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 IGIPA6NJ69 53 aa12.63□□□□□ -0.39
MCF2L-230ENST00000491028 MRPS36P82909 103 aaKnown RBP12.63□□□□□ -0.39
MCF2L-230ENST00000491028 FAM19A2Q8N3H0 131 aa12.63□□□□□ -0.39
MCF2L-230ENST00000491028 TMEM141Q96I45 108 aa12.63□□□□□ -0.39
MCF2L-230ENST00000491028 SCGB3A1Q96QR1 104 aa12.63□□□□□ -0.39
MCF2L-230ENST00000491028 ANGP03950 147 aaKnown RBP12.62□□□□□ -0.39
MCF2L-230ENST00000491028 CDC42SE2Q9NRR3 84 aa12.62□□□□□ -0.39
MCF2L-230ENST00000491028 VPS13DQ5THJ4 4388 aa12.62□□□□□ -0.39
MCF2L-230ENST00000491028 ALMS1Q8TCU4 4167 aa12.62□□□□□ -0.39
MCF2L-230ENST00000491028 ATP5LO75964 103 aa12.61□□□□□ -0.39
MCF2L-230ENST00000491028 PAPPA-AS1Q5QFB9 102 aa12.61□□□□□ -0.39
MCF2L-230ENST00000491028 Q6ZUT4 128 aa12.61□□□□□ -0.39
MCF2L-230ENST00000491028 ZNF664Q8N3J9 261 aa12.61□□□□□ -0.39
MCF2L-230ENST00000491028 IGLV4-3A0A075B6K6 122 aa12.6□□□□□ -0.39
MCF2L-230ENST00000491028 NBDYA0A0U1RRE5 68 aa12.6□□□□□ -0.39
MCF2L-230ENST00000491028 LCE6AA0A183 80 aa12.6□□□□□ -0.39
MCF2L-230ENST00000491028 PACRGQ96M98 296 aaPredicted RBP12.6□□□□□ -0.39
MCF2L-230ENST00000491028 KLK12Q9UKR0 248 aa12.6□□□□□ -0.39
MCF2L-230ENST00000491028 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.59□□□□□ -0.39
MCF2L-230ENST00000491028 LEPROTL1O95214 131 aa12.59□□□□□ -0.39
MCF2L-230ENST00000491028 Q6ZN92 141 aa12.59□□□□□ -0.39
MCF2L-230ENST00000491028 PRR34Q9NV39 138 aa12.59□□□□□ -0.39
MCF2L-230ENST00000491028 LYSTQ99698 3801 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 IBA57-AS1B1ANH7 110 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 CRPP02741 224 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 LINC00269Q8N2A0 174 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 FAM104AQ969W3 186 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 HSPB8Q9UJY1 196 aa12.58□□□□□ -0.4
MCF2L-230ENST00000491028 REG3AQ06141 175 aa12.57□□□□□ -0.4
MCF2L-230ENST00000491028 TEX43Q6ZNM6 134 aa12.57□□□□□ -0.4
MCF2L-230ENST00000491028 HIST3H2BBQ8N257 126 aa12.57□□□□□ -0.4
MCF2L-230ENST00000491028 OPRPNQ99935 248 aaPredicted RBP12.57□□□□□ -0.4
MCF2L-230ENST00000491028 TMA7Q9Y2S6 64 aaKnown RBP12.57□□□□□ -0.4
MCF2L-230ENST00000491028 RYR3Q15413 4870 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 C5orf52A6NGY3 159 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 UBE2WQ96B02 151 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 IFI27L1Q96BM0 104 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 AMELXQ99217 191 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 KRTAP1-5Q9BYS1 174 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 VCX2Q9H322 139 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 DNAH1Q9P2D7 4330 aa12.56□□□□□ -0.4
MCF2L-230ENST00000491028 TRAV8-3A0A0A6YYJ7 113 aa12.55□□□□□ -0.4
MCF2L-230ENST00000491028 SNRPEP62304 92 aaKnown RBP12.55□□□□□ -0.4
MCF2L-230ENST00000491028 MIAQ16674 131 aa12.55□□□□□ -0.4
MCF2L-230ENST00000491028 RNASE13Q5GAN3 156 aaKnown RBP12.55□□□□□ -0.4
MCF2L-230ENST00000491028 ENHOQ6UWT2 76 aa12.55□□□□□ -0.4
MCF2L-230ENST00000491028 C2orf88Q9BSF0 95 aa12.55□□□□□ -0.4
MCF2L-230ENST00000491028 FABP4P15090 132 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 S100A2P29034 98 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 CLPSL2Q6UWE3 100 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 Q6ZR54 194 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 LINC00173Q6ZV60 143 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 BAALCQ8WXS3 180 aa12.54□□□□□ -0.4
MCF2L-230ENST00000491028 TRAV8-4A0A0B4J246 113 aa12.53□□□□□ -0.4
MCF2L-230ENST00000491028 IFITM10A6NMD0 228 aa12.53□□□□□ -0.4
MCF2L-230ENST00000491028 CCL25O15444 150 aa12.53□□□□□ -0.4
MCF2L-230ENST00000491028 PMVKQ15126 192 aa12.52□□□□□ -0.41
MCF2L-230ENST00000491028 IGKV3OR2-268A0A0C4DH90 116 aa12.51□□□□□ -0.41
MCF2L-230ENST00000491028 LINC00959A0A1B0GUT2 108 aa12.51□□□□□ -0.41
MCF2L-230ENST00000491028 M0R2N4 97 aa12.51□□□□□ -0.41
MCF2L-230ENST00000491028 RMI2Q96E14 147 aa12.51□□□□□ -0.41
MCF2L-230ENST00000491028 PRSS1P07477 247 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 SS18Q15532 418 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 NFE4Q86UQ8 179 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 HIST1H2BLQ99880 126 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 MAP1LC3CQ9BXW4 147 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 Q9HAA7 133 aa12.5□□□□□ -0.41
MCF2L-230ENST00000491028 TRAV13-1A0A0B4J241 112 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 TRAV12-1A0A0B4J245 112 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 UBE2D1P51668 147 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 ZC2HC1BQ5TFG8 222 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 C1orf43Q9BWL3 253 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 CST9LQ9H4G1 147 aa12.49□□□□□ -0.41
MCF2L-230ENST00000491028 PRSS29PA6NIE9 313 aa12.48□□□□□ -0.41
MCF2L-230ENST00000491028 FAM19A3Q7Z5A8 133 aa12.48□□□□□ -0.41
MCF2L-230ENST00000491028 COX11Q9Y6N1 276 aa12.48□□□□□ -0.41
MCF2L-230ENST00000491028 SEC11AP67812 179 aa12.47□□□□□ -0.41
MCF2L-230ENST00000491028 DNAH6Q9C0G6 4158 aa12.47□□□□□ -0.41
MCF2L-230ENST00000491028 IGKV2D-24A0A075B6R9 120 aa12.46□□□□□ -0.41
MCF2L-230ENST00000491028 C6orf223Q8N319 242 aa12.46□□□□□ -0.41
MCF2L-230ENST00000491028 CHCHD10Q8WYQ3 142 aaPredicted RBP12.46□□□□□ -0.41
MCF2L-230ENST00000491028 TM2D2Q9BX73 214 aa12.46□□□□□ -0.41
MCF2L-230ENST00000491028 IGLV10-54A0A075B6I4 117 aa12.45□□□□□ -0.42
MCF2L-230ENST00000491028 H0Y8G0 127 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 SYS1-DBNDD2H3BUS1 97 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 C3orf79P0CE67 100 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 LINC00242Q5T6M2 205 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 SPATA12Q7Z6I5 190 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
MCF2L-230ENST00000491028 SACSQ9NZJ4 4579 aa12.44□□□□□ -0.42
MCF2L-230ENST00000491028 F8VRH5 84 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 XCL1P47992 114 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 KRTDAPP60985 99 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 HERVK_113P63121 156 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 ODF1Q14990 250 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 C1orf134Q5TEV5 83 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 KRTAP26-1Q6PEX3 210 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 CD164L2Q6UWJ8 174 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 PET117Q6UWS5 81 aa12.43□□□□□ -0.42
MCF2L-230ENST00000491028 A0A0J9YXV3 536 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms